Package: mafft (7.525-1 and others)

Links for mafft

Debian Resources:

Download Source Package mafft:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Charles Plessy (QA Page)
Andreas Tille (QA Page)

External Resources:

Homepage [mafft.cbrc.jp]

Similar packages:

Program til justering af flere aminosyrer eller nukleotide sekvenser

MAFFT er et program til justering af flere sekvenser, der tilbyder tre præcisionsorienterede metoder:

  * L-INS-i (nok mest præcis, anbefales for <200 sekvenser;
    iterativ raffineringsmetode som indarbejder information om lokal
    parvis justering),
  * G-INS-i (egnet til sekvenser af samme længder; anbefales til
    <200 sekvenser; iterativ raffineringsmetode til at indarbejde
    information om den globalt parvise justering),
  * E-INS-i (egnet til sekvenser, der indeholder store regioner som ikke
    kan justeres; anbefales til <200 sekvenser),

og fem hastigheds-orienterede metoder:

  * FFT-NS-i (iterativ raffineringsmetode; blot to cyklusser),
  * FFT-NS-i (iterativ raffineringmetode; maks. 1000 gentagelser),
  * FFT-NS-2 (hurtig; progressiv metode),
  * FFT-NS-1 (meget hurtig; anbefales til >2000 sekvenser; progressiv
    metode med en groft vejledende træ),
  * NW-NS-PartTree-1 (anbefales til ~50.000 sekvenser; progressiv
    metoden med PartTree-algoritmen).

Tags: Biology: Clustal/ALN, Proteins, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::comparing, works-with-format::plaintext, Works with: Biological Sequence

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Download mafft

Download for all available architectures
Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	7.525-1	1,011.8 kB	14,678.0 kB	[list of files]
amd64	7.525-1	1,158.5 kB	13,589.0 kB	[list of files]
arm64	7.525-1	958.1 kB	12,416.0 kB	[list of files]
armel	7.525-1	936.4 kB	12,409.0 kB	[list of files]
armhf	7.525-1	783.4 kB	9,145.0 kB	[list of files]
hppa (unofficial port)	7.525-1	897.3 kB	11,170.0 kB	[list of files]
i386	7.525-1	1,010.4 kB	13,541.0 kB	[list of files]
ia64 (unofficial port)	7.505-1	1,103.2 kB	24,053.0 kB	[list of files]
loong64 (unofficial port)	7.525-1	970.8 kB	13,369.0 kB	[list of files]
m68k (unofficial port)	7.525-1	981.4 kB	10,985.0 kB	[list of files]
mips64el	7.525-1	887.6 kB	14,552.0 kB	[list of files]
ppc64 (unofficial port)	7.525-1	1,051.8 kB	17,174.0 kB	[list of files]
ppc64el	7.525-1	1,028.2 kB	16,470.0 kB	[list of files]
riscv64	7.525-1	1,087.4 kB	9,730.0 kB	[list of files]
s390x	7.525-1	1,059.1 kB	15,720.0 kB	[list of files]
sh4 (unofficial port)	7.525-1	883.0 kB	11,962.0 kB	[list of files]
sparc64 (unofficial port)	7.525-1	1,083.5 kB	33,592.0 kB	[list of files]
x32 (unofficial port)	7.525-1	1,063.3 kB	12,137.0 kB	[list of files]