Package: t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 and others)

Links for t-coffee

Debian Resources:

Download Source Package t-coffee:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Steffen Moeller (QA Page)
Andreas Tille (QA Page)
Étienne Mollier (QA Page)

External Resources:

Homepage [www.tcoffee.org]

Similar packages:

Flersekvensjustering

T-Coffee er en pakke for flersekvensjustering. Givet et sæt af sekvenser (proteiner eller DNA) opretter T-Coffee en flersekvensjustering. Version 2.00 og højere kan mikse sekvenser og strukturer.

T-Coffee tillader kombinationen af flere/parvise, globale eller lokale justeringer i en enkel model. Programmet kan også estimere konsistensniveauet for hver placering i den nye justering med resten af justeringen. Se pre-print for yderligere information.

T-Coffee har en variant kaldet M-Coffee som gør det muligt at kombinere uddata af mange flersekvensjusteringspakker. I sin udgivet version bruger den MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA og T-Coffee. En speciel version er blevet lavet for Debian, DM-Coffee, som kun bruger frie programmer ved at erstatte Clustal W med Kalign. Brug af 8 Methods for M-Coffee kan undertiden være ret tungt. Du kan bruge et undersæt af dine favoritmetoder, hvis du foretrækker dette.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Need an extra tag, works-with-format::plaintext, works-with::TODO

Other Packages Related to t-coffee

depends

recommends

suggests

enhances

dep: libc6 (>= 2.34) [not alpha, ia64, sh4]

GNU C-bibliotek: Delte biblioteker
also a virtual package provided by libc6-udeb

dep: libc6 (>= 2.36) [sh4]
dep: libc6.1 (>= 2.33) [alpha]

GNU C-bibliotek: Delte biblioteker
also a virtual package provided by libc6.1-udeb

dep: libc6.1 (>= 2.36) [ia64]
dep: libgcc-s1 (>= 3.0) [not armel, armhf, hppa, ia64, m68k, ppc64, ppc64el, sh4]

GCC støttebibliotek

dep: libgcc-s1 (>= 3.3.4) [sh4]

dep: libgcc-s1 (>= 3.4.4) [ppc64, ppc64el]

dep: libgcc-s1 (>= 3.5) [armel, armhf]

dep: libgcc-s1 (>= 4.2) [ia64]
dep: libgcc-s2 (>= 4.2.1) [m68k]

GCC støttebibliotek
dep: libgcc-s4 (>= 4.1.1) [hppa]

GCC støttebibliotek
dep: libstdc++6 (>= 13.1) [riscv64]

GNU Standard C++ bibliotek v3

dep: libstdc++6 (>= 4.1.1) [not riscv64]
dep: libunwind8 [ia64]

Bibliotek til at bestemme call-chain for et program - kørselstid

rec: amap-align

Proteinflerjustering af sekvensudglødning
rec: clustalo

Alment sekvenssammenligningsprogram for proteiner
rec: clustalw

Global nukleotid eller peptid sekvensjustering
rec: dialign-tx

Segmentbaseret flersekvensjustering
rec: fsa

Hurtig statistisk sammenligning af protein-, RNA- eller DNA-sekvenser
rec: kalign

Global og progressiv flersekvensjustering
rec: libsoap-lite-perl

Perlimplementering af en SOAP-klient og -server
rec: libxml-simple-perl

Perlmodul for læsning og skrivning af XML
rec: mafft

Program til justering af flere aminosyrer eller nukleotide sekvenser
rec: muscle

Flerjusteringsprogram for proteinsekvenser
rec: mustang

strukturel justering på flere måder af proteiner
rec: ncbi-blast+

Næste generation programpakke for BLAST-sekvens søgeværktøjer
rec: poa

Partial Order Alignment for flere sekvenssammenligninger
rec: prank

Probabilistic Alignment Kit for DNA, codon and amino-acid sequences
rec: probcons

flersekvens-sammenstilling baseret på probabilistisk konsistens (PROBabilistic CONSistency)
rec: proda

multi-sammenligning af protein-sekvenser
rec: tm-align

Strukturel sammenligning af proteiner

sug: boxshade

Pæn udskrift af flere sekvensersammenstillinger
sug: seaview

Grænseflade til flere platforme for sekvenssammenligning og fylogeni
sug: t-coffee-examples

Annoterede eksempler for brug af T-Coffee

Download t-coffee

Download for all available architectures
Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	997.0 kB	3,340.0 kB	[list of files]
amd64	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	1,007.5 kB	2,715.0 kB	[list of files]
arm64	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	894.1 kB	2,634.0 kB	[list of files]
armel	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	846.5 kB	2,569.0 kB	[list of files]
armhf	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	857.3 kB	1,929.0 kB	[list of files]
hppa (unofficial port)	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	910.9 kB	2,720.0 kB	[list of files]
i386	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	1,010.5 kB	3,033.0 kB	[list of files]
ia64 (unofficial port)	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	1,208.2 kB	5,405.0 kB	[list of files]
m68k (unofficial port)	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	893.9 kB	2,825.0 kB	[list of files]
mips64el	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	950.6 kB	3,380.0 kB	[list of files]
ppc64 (unofficial port)	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	1,020.1 kB	3,466.0 kB	[list of files]
ppc64el	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	1,063.4 kB	3,402.0 kB	[list of files]
riscv64	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1+b1	996.7 kB	2,295.0 kB	[list of files]
s390x	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	921.2 kB	2,974.0 kB	[list of files]
sh4 (unofficial port)	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	1,073.0 kB	2,570.0 kB	[list of files]
sparc64 (unofficial port)	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	835.5 kB	3,150.0 kB	[list of files]
x32 (unofficial port)	13.45.0.4846264+really13.41.0.28bdc39+dfsg-1	1,010.6 kB	2,710.0 kB	[list of files]