[ Källkod: nanopolish ]
Paket: nanopolish (0.14.0-2 och andra)
Länkar för nanopolish
Debianresurser:
Hämta källkodspaketet nanopolish:
Ansvariga:
Externa resurser:
- Hemsida [github.com]
Liknande paket:
consensus caller for nanopore sequencing data
Nanopolish uses a signal-level hidden Markov model for consensus calling of nanopore genome sequencing data. It can perform signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more.
Andra paket besläktade med nanopolish
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- dep: libc6 (>= 2.23) [sparc64]
- GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
- dep: libc6 (>= 2.29) [ppc64]
- dep: libc6 (>= 2.38) [ej alpha, ia64, loong64, ppc64, sh4, sparc64]
- dep: libc6 (>= 2.41) [loong64, sh4]
-
- dep: libc6.1 (>= 2.37) [ia64]
- GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6.1-udeb
- dep: libc6.1 (>= 2.38) [alpha]
-
- dep: libgcc-s1 (>= 3.3.1) [amd64, arm64, i386, loong64, mips64el, ppc64el, x32]
- GCC stödbibliotek
- dep: libgcc-s1 (>= 3.4) [alpha, riscv64]
- dep: libgcc-s1 (>= 3.4.4) [ppc64]
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [ia64, sh4]
-
- dep: libgcc-s2 (>= 4.2.1) [m68k]
- GCC stödbibliotek
-
- dep: libgcc-s4 (>= 4.1.1) [hppa]
- GCC stödbibliotek
-
- dep: libgcc1 (>= 1:3.4) [sparc64]
- Paketet inte tillgängligt
-
- dep: libgomp1 (>= 4.9) [sparc64]
- GCC OpenMP (GOMP) support library
- dep: libgomp1 (>= 6) [ej sparc64]
-
- dep: libhdf5-100 [sparc64]
- Paketet inte tillgängligt
-
- dep: libhdf5-103-1 [ppc64]
- HDF5 C runtime files - serial version
-
- dep: libhdf5-103-1t64 [ia64]
- HDF5 C runtime files - serial version
-
- dep: libhdf5-310 (>= 1.14.3) [ej ia64, ppc64, sparc64]
- HDF5 C runtime files - serial version
-
- dep: libhts2 [sparc64]
- Paketet inte tillgängligt
-
- dep: libhts3 (>= 1.10) [ppc64]
- C library for high-throughput sequencing data formats
-
- dep: libhts3t64 (>= 1.17) [ej ppc64, sparc64]
- C library for high-throughput sequencing data formats
-
- dep: libslow5-0 (>= 0.5.1+dfsg) [hppa]
- library for reading & writing SLOW5 files
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- dep: libslow5-0t64 (>= 0.5.1) [ej hppa, ppc64, sparc64]
- library for reading & writing SLOW5 files
-
- dep: libstdc++6 (>= 13.1) [ia64]
- GNU standardbibliotek v3 för C++
- dep: libstdc++6 (>= 14) [ej ia64, ppc64, sparc64]
- dep: libstdc++6 (>= 5.2) [sparc64]
- dep: libstdc++6 (>= 9) [ppc64]
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- dep: libstreamvbyte0 (>= 0.4.1) [ej ppc64, sparc64]
- fast integer compression in C using the StreamVByte codec
-
- dep: libunwind8 [ia64]
- library to determine the call-chain of a program - runtime
-
- dep: perl [ej sparc64]
- Larry Wall's Practical Extraction and Report Language
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- dep: python3 [ej sparc64]
- interactive high-level object-oriented language (default python3 version)
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- dep: zlib1g (>= 1:1.1.4) [ej armel, armhf, hppa, m68k, sh4]
- Kompressionsbibliotek - körtidspaket
- dep: zlib1g (>= 1:1.2.3.3) [armel, armhf, hppa, m68k, sh4]
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- rec: python3-biopython
- Python3 library for bioinformatics
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- rec: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
Hämta nanopolish
| Arkitektur | Version | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|---|
| alpha (inofficiell anpassning) | 0.14.0-2 | 2.142,2 kbyte | 9.861,0 kbyte | [filförteckning] |
| amd64 | 0.14.0-2 | 2.153,9 kbyte | 9.654,0 kbyte | [filförteckning] |
| arm64 | 0.14.0-2 | 2.080,6 kbyte | 9.474,0 kbyte | [filförteckning] |
| armel | 0.14.0-2 | 2.085,5 kbyte | 9.600,0 kbyte | [filförteckning] |
| armhf | 0.14.0-2 | 2.090,9 kbyte | 9.216,0 kbyte | [filförteckning] |
| hppa (inofficiell anpassning) | 0.14.0-2 | 2.145,4 kbyte | 9.759,0 kbyte | [filförteckning] |
| i386 | 0.14.0-2 | 2.173,9 kbyte | 9.728,0 kbyte | [filförteckning] |
| ia64 (inofficiell anpassning) | 0.14.0-1+b1 | 2.281,9 kbyte | 10.820,0 kbyte | [filförteckning] |
| loong64 (inofficiell anpassning) | 0.14.0-2 | 2.107,9 kbyte | 9.600,0 kbyte | [filförteckning] |
| m68k (inofficiell anpassning) | 0.14.0-2 | 2.120,9 kbyte | 9.688,0 kbyte | [filförteckning] |
| mips64el | 0.14.0-2 | 2.108,4 kbyte | 9.845,0 kbyte | [filförteckning] |
| ppc64 (inofficiell anpassning) | 0.13.3-2 | 2.208,6 kbyte | 9.987,0 kbyte | [filförteckning] |
| ppc64el | 0.14.0-2 | 2.154,3 kbyte | 9.794,0 kbyte | [filförteckning] |
| riscv64 | 0.14.0-2 | 2.145,1 kbyte | 9.306,0 kbyte | [filförteckning] |
| sh4 (inofficiell anpassning) | 0.14.0-2 | 2.236,6 kbyte | 9.601,0 kbyte | [filförteckning] |
| sparc64 (inofficiell anpassning) | 0.5.0-1+b1 | 1.799,8 kbyte | 3.490,0 kbyte | [filförteckning] |
| x32 (inofficiell anpassning) | 0.14.0-2 | 2.154,5 kbyte | 9.556,0 kbyte | [filförteckning] |