[ Källkod: nanopolish ]
Paket: nanopolish (0.14.0-2)
Länkar för nanopolish
Debianresurser:
Hämta källkodspaketet nanopolish:
Ansvariga:
Externa resurser:
- Hemsida [github.com]
Liknande paket:
consensus caller for nanopore sequencing data
Nanopolish uses a signal-level hidden Markov model for consensus calling of nanopore genome sequencing data. It can perform signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more.
Andra paket besläktade med nanopolish
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- dep: libc6 (>= 2.38)
- GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
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- dep: libgcc-s1 (>= 3.3.1) [ej armhf, riscv64]
- GCC stödbibliotek
- dep: libgcc-s1 (>= 3.4) [riscv64]
- dep: libgcc-s1 (>= 3.5) [armhf]
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- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
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- dep: libhdf5-310 (>= 1.14.3)
- HDF5 C runtime files - serial version
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- dep: libhts3t64 (>= 1.17)
- C library for high-throughput sequencing data formats
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- dep: libslow5-0t64 (>= 0.5.1)
- library for reading & writing SLOW5 files
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- dep: libstdc++6 (>= 14)
- GNU standardbibliotek v3 för C++
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- dep: libstreamvbyte0 (>= 0.4.1)
- fast integer compression in C using the StreamVByte codec
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: zlib1g (>= 1:1.1.4) [ej armhf]
- Kompressionsbibliotek - körtidspaket
- dep: zlib1g (>= 1:1.2.3.3) [armhf]
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- rec: python3-biopython
- Python3 library for bioinformatics
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- rec: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
Hämta nanopolish
| Arkitektur | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|
| amd64 | 2.153,9 kbyte | 9.654,0 kbyte | [filförteckning] |
| arm64 | 2.080,6 kbyte | 9.474,0 kbyte | [filförteckning] |
| armhf | 2.090,9 kbyte | 9.216,0 kbyte | [filförteckning] |
| i386 | 2.173,9 kbyte | 9.728,0 kbyte | [filförteckning] |
| ppc64el | 2.154,3 kbyte | 9.794,0 kbyte | [filförteckning] |
| riscv64 | 2.145,1 kbyte | 9.306,0 kbyte | [filförteckning] |