Package: nanopolish (0.14.0-2)

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Homepage [github.com]

Similar packages:

consensus caller for nanopore sequencing data

Nanopolish uses a signal-level hidden Markov model for consensus calling of nanopore genome sequencing data. It can perform signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more.

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dep: libc6 (>= 2.38)

GNU C könyvtár: megosztott könyvtárak
also a virtual package provided by libc6-udeb
dep: libgcc-s1 (>= 3.3.1) [not armhf, riscv64]

GCC támogató programkönyvtár

dep: libgcc-s1 (>= 3.4) [riscv64]

dep: libgcc-s1 (>= 3.5) [armhf]
dep: libgomp1 (>= 6)

GCC OpenMP (GOMP) support library
dep: libhdf5-310 (>= 1.14.3)

HDF5 C runtime files - serial version
dep: libhts3t64 (>= 1.17)

C library for high-throughput sequencing data formats
dep: libslow5-0t64 (>= 0.5.1)

library for reading & writing SLOW5 files
dep: libstdc++6 (>= 14)

GNU Standard C++ Library v3
dep: libstreamvbyte0 (>= 0.4.1)

fast integer compression in C using the StreamVByte codec
dep: perl

Larry Wall's Practical Extraction and Report Language
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: zlib1g (>= 1:1.1.4) [not armhf]

tömörítő könyvtár - futásidejű

dep: zlib1g (>= 1:1.2.3.3) [armhf]

rec: python3-biopython

Python3 library for bioinformatics
rec: python3-pysam

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sug: make

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Download nanopolish

Download for all available architectures
Architecture	Package Size	Installed Size	Files
amd64	2,153.9 kB	9,654.0 kB	[list of files]
arm64	2,080.6 kB	9,474.0 kB	[list of files]
armhf	2,090.9 kB	9,216.0 kB	[list of files]
i386	2,173.9 kB	9,728.0 kB	[list of files]
ppc64el	2,154.3 kB	9,794.0 kB	[list of files]
riscv64	2,145.1 kB	9,306.0 kB	[list of files]