Pakket: samtools (1.22.1-1 en anderen)

Verwijzigingen voor samtools

Debian bronnen:

Het bronpakket samtools downloaden:

Beheerders:

Externe bronnen:

Homepage [www.htslib.org]

Vergelijkbare pakketten:

processing sequence alignments in SAM, BAM and CRAM formats

Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) and CRAM formats, does sorting, merging and indexing, and allows one to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM or CRAM (not SAM) file on a remote FTP or HTTP server.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Networking: Client, Network Protocol: FTP, protocol::http, role::program, Scope: Utility, Interface Toolkit: Ncurses TUI, Purpose: use::analysing, use::calculating, Filtering, Works with: Biological Sequence

Andere aan samtools gerelateerde pakketten

depends

recommends

suggests

enhances

dep: libc6 (>= 2.34) [niet alpha, ia64, loong64, sh4]

GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb

dep: libc6 (>= 2.41) [loong64, sh4]
dep: libc6.1 (>= 2.34) [alpha]

GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6.1-udeb

dep: libc6.1 (>= 2.37) [ia64]
dep: libhts3t64 (>= 1.17) [ia64]

C library for high-throughput sequencing data formats

dep: libhts3t64 (>= 1.22.1+ds-1) [niet ia64]
dep: libncurses6 (>= 6)

shared libraries for terminal handling
dep: libtinfo6 (>= 6)

shared low-level terminfo library for terminal handling
dep: zlib1g (>= 1:1.1.4) [niet alpha, armel, armhf, hppa, i386, m68k, sh4]

compressiebibliotheek - programma's

dep: zlib1g (>= 1:1.2.3.3) [alpha, armel, armhf, hppa, i386, m68k, sh4]

sug: cwltool

Common Workflow Language reference implementation

samtools downloaden

Pakket downloaden voor alle beschikbare platforms
Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	1.22.1-1	673,3 kB	1.886,0 kB	[overzicht]
amd64	1.22.1-1	680,3 kB	1.495,0 kB	[overzicht]
arm64	1.22.1-1	650,1 kB	1.755,0 kB	[overzicht]
armel	1.22.1-1	640,8 kB	1.748,0 kB	[overzicht]
armhf	1.22.1-1	645,0 kB	1.556,0 kB	[overzicht]
hppa (unofficial port)	1.22.1-1	677,6 kB	1.439,0 kB	[overzicht]
i386	1.22.1-1	713,4 kB	1.632,0 kB	[overzicht]
ia64 (unofficial port)	1.19.2-1+b1	716,1 kB	2.112,0 kB	[overzicht]
loong64 (unofficial port)	1.22.1-1	666,7 kB	1.814,0 kB	[overzicht]
m68k (unofficial port)	1.22.1-1	648,3 kB	1.420,0 kB	[overzicht]
mips64el	1.22.1-1	657,9 kB	1.907,0 kB	[overzicht]
ppc64 (unofficial port)	1.22.1-1	693,8 kB	2.011,0 kB	[overzicht]
ppc64el	1.22.1-1	706,9 kB	2.011,0 kB	[overzicht]
riscv64	1.22.1-1	685,7 kB	1.339,0 kB	[overzicht]
s390x	1.22.1-1	683,6 kB	1.555,0 kB	[overzicht]
sh4 (unofficial port)	1.22.1-1	742,2 kB	1.686,0 kB	[overzicht]
sparc64 (unofficial port)	1.22.1-1	641,8 kB	7.784,0 kB	[overzicht]
x32 (unofficial port)	1.22.1-1	683,9 kB	1.460,0 kB	[overzicht]