Package: python3-pairtools (1.1.3-2 and others)

Links for python3-pairtools

Debian Resources:

Download Source Package pairtools:

Maintainers:

External Resources:

Homepage [github.com]

Similar packages:

infrastruttura per elaborare dati di sequenziamento da un esperimento Hi-C

Semplice e veloce infrastruttura a riga di comando per elaborare dati di sequenziamento da un esperimento Hi-C.

Elabora allineamenti di sequenze a terminali appaiati ed effettua le seguenti operazioni:

 - rileva giunzioni di legatura (alias coppie Hi-C) in sequenze allineate,
   a terminali accoppiati, di molecole di DNA Hi-C;
 - ordina file .pairs per analisi successive;
 - rileva, applica tag e rimuove duplicati di PCR/ottici;
 - genera statistiche esaurienti su insiemi di dati Hi-C;
 - seleziona coppie Hi-C in base a criteri definiti in modo flessibile;
 - ripristina allineamenti .sam da coppie Hi-C.

Other Packages Related to python3-pairtools

depends

recommends

suggests

enhances

dep: cython3 [hppa, ia64, ppc64, sparc64, x32]

estensioni C per Python 3
dep: libc6 (>= 2.14) [amd64]

Libreria C GNU: librerie condivise
also a virtual package provided by libc6-udeb

dep: libc6 (>= 2.16) [x32]

dep: libc6 (>= 2.17) [arm64, ppc64el]

dep: libc6 (>= 2.27) [riscv64]

dep: libc6 (>= 2.3.4) [hppa]

dep: libc6 (>= 2.4) [m68k, mips64el, ppc64, sparc64]

dep: libc6 (>= 2.40) [sh4]

dep: libc6 (>= 2.41) [loong64]
dep: libc6.1 (>= 2.33) [ia64]

Libreria C GNU: librerie condivise
also a virtual package provided by libc6.1-udeb

dep: libc6.1 (>= 2.4) [alpha]
dep: libgcc-s1 (>= 3.0) [not hppa, ia64, m68k, ppc64, sparc64, x32]

libreria di supporto a GCC
dep: libgcc-s2 (>= 4.2.1) [m68k]

libreria di supporto a GCC
dep: libstdc++6 (>= 11) [not hppa, ia64, ppc64, sparc64, x32]

libreria GNU Standard C++, versione 3
dep: python3

linguaggio interattivo di alto livello orientato agli oggetti (versione python3 predefinita)

dep: python3 (<< 3.11) [ia64, x32]

dep: python3 (<< 3.12) [hppa, ppc64, sparc64]

dep: python3 (<< 3.14) [not hppa, ia64, ppc64, sparc64, x32]

dep: python3 (>= 3.10~) [hppa, ia64, ppc64, sparc64, x32]

dep: python3 (>= 3.12~) [m68k, sh4]

dep: python3 (>= 3.13~) [alpha, amd64, arm64, loong64, mips64el, ppc64el, riscv64]
dep: python3-bioframe [not hppa, ia64, ppc64, sparc64, x32]

library to enable flexible, scalable operations on genomic interval dataframes
dep: python3-click

kit per la creazione di interfacce a riga di comando - Python 3.x
dep: python3-nose [hppa, ia64, ppc64, sparc64, x32]

Package not available
dep: python3-numpy [alpha, amd64, arm64, loong64, mips64el, ppc64el, riscv64]

libreria Python per calcoli numerici (Python 3)

dep: python3-numpy (>= 1:1.20.0) [hppa, ia64, ppc64, sparc64, x32]

dep: python3-numpy (>= 1:1.25.0) [m68k, sh4]
dep: python3-numpy-abi9 [hppa, ia64, m68k, ppc64, sh4, sparc64, x32]

virtual package provided by python3-numpy
dep: python3-numpy2-abi0 [alpha, amd64, arm64, loong64, mips64el, ppc64el, riscv64]

virtual package provided by python3-numpy

or python3-numpy-abi9

virtual package provided by python3-numpy
dep: python3-pandas [not hppa, ia64, ppc64, sparc64, x32]

strutture dati per dati "relazionali" o "etichettati"
dep: python3-pysam (>= 0.20.0+ds-3~) [not hppa, ia64, ppc64, sparc64, x32]

interfaccia al formato SAM/BAM per allineamento e mappatura di sequenze (Python 3)
dep: python3-scipy [not hppa, ia64, ppc64, sparc64, x32]

strumenti scientifici per Python 3
dep: python3-standard-pipes [not hppa, ia64, ppc64, sparc64, x32]

pipes della libreria standard di Python (Python 3)
dep: python3-yaml [not hppa, ia64, ppc64, sparc64, x32]

analizzatore ed emettitore YAML per Python 3

sug: python3-pairtools-examples (>= 1.0.2)

infrastruttura per elaborare dati di sequenziamento da un esperimento Hi-C (esempi)

Download python3-pairtools

Download for all available architectures
Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.1.3-2	188.6 kB	927.0 kB	[list of files]
amd64	1.1.3-2	203.1 kB	840.0 kB	[list of files]
arm64	1.1.3-2	184.4 kB	924.0 kB	[list of files]
hppa (unofficial port)	0.3.0-3.2+b2	144.6 kB	640.0 kB	[list of files]
ia64 (unofficial port)	0.3.0-3.2+b1	137.3 kB	612.0 kB	[list of files]
loong64 (unofficial port)	1.1.3-2	194.3 kB	924.0 kB	[list of files]
m68k (unofficial port)	1.1.2-1	216.9 kB	1,096.0 kB	[list of files]
mips64el	1.1.3-2	180.0 kB	939.0 kB	[list of files]
ppc64 (unofficial port)	0.3.0-3.2+b2	146.6 kB	752.0 kB	[list of files]
ppc64el	1.1.3-2	196.3 kB	988.0 kB	[list of files]
riscv64	1.1.3-2	198.1 kB	732.0 kB	[list of files]
sh4 (unofficial port)	1.1.2-1	279.6 kB	1,312.0 kB	[list of files]
sparc64 (unofficial port)	0.3.0-3.2+b2	125.9 kB	2,292.0 kB	[list of files]
x32 (unofficial port)	0.3.0-3.2+b1	121.6 kB	405.0 kB	[list of files]