[ Källkod: pairtools ]
Paket: python3-pairtools (1.1.3-2 och andra)
Länkar för python3-pairtools
Debianresurser:
Hämta källkodspaketet pairtools:
Ansvariga:
Externa resurser:
- Hemsida [github.com]
Liknande paket:
Framework to process sequencing data from a Hi-C experiment
Simple and fast command-line framework to process sequencing data from a Hi-C experiment.
Process pair-end sequence alignments and perform the following operations:
- Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
sequences of Hi-C DNA molecules
- Sort .pairs files for downstream analyses
- Detect, tag and remove PCR/optical duplicates
- Generate extensive statistics of Hi-C datasets
- Select Hi-C pairs given flexibly defined criteria
- Restore .sam alignments from Hi-C pairs
Andra paket besläktade med python3-pairtools
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-
- dep: cython3 [hppa, ia64, ppc64, sparc64, x32]
- C-Extensions for Python 3
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- dep: libc6 (>= 2.14) [amd64]
- GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
- dep: libc6 (>= 2.16) [x32]
- dep: libc6 (>= 2.17) [arm64, ppc64el]
- dep: libc6 (>= 2.27) [riscv64]
- dep: libc6 (>= 2.3.4) [hppa]
- dep: libc6 (>= 2.4) [m68k, mips64el, ppc64, sparc64]
- dep: libc6 (>= 2.40) [sh4]
- dep: libc6 (>= 2.41) [loong64]
-
- dep: libc6.1 (>= 2.33) [ia64]
- GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6.1-udeb
- dep: libc6.1 (>= 2.4) [alpha]
-
- dep: libgcc-s1 (>= 3.0) [ej hppa, ia64, m68k, ppc64, sparc64, x32]
- GCC stödbibliotek
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- dep: libgcc-s2 (>= 4.2.1) [m68k]
- GCC stödbibliotek
-
- dep: libstdc++6 (>= 11) [ej hppa, ia64, ppc64, sparc64, x32]
- GNU standardbibliotek v3 för C++
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.11) [ia64, x32]
- dep: python3 (<< 3.12) [hppa, ppc64, sparc64]
- dep: python3 (<< 3.14) [ej hppa, ia64, ppc64, sparc64, x32]
- dep: python3 (>= 3.10~) [hppa, ia64, ppc64, sparc64, x32]
- dep: python3 (>= 3.12~) [m68k, sh4]
- dep: python3 (>= 3.13~) [alpha, amd64, arm64, loong64, mips64el, ppc64el, riscv64]
-
- dep: python3-bioframe [ej hppa, ia64, ppc64, sparc64, x32]
- library to enable flexible, scalable operations on genomic interval dataframes
-
- dep: python3-click
- Command-Line Interface Creation Kit - Python 3.x
-
- dep: python3-nose [hppa, ia64, ppc64, sparc64, x32]
- Paketet inte tillgängligt
-
- dep: python3-numpy [alpha, amd64, arm64, loong64, mips64el, ppc64el, riscv64]
- Python library for numerical computations (Python 3)
- dep: python3-numpy (>= 1:1.20.0) [hppa, ia64, ppc64, sparc64, x32]
- dep: python3-numpy (>= 1:1.25.0) [m68k, sh4]
-
- dep: python3-numpy-abi9 [hppa, ia64, m68k, ppc64, sh4, sparc64, x32]
- virtuellt paket som tillhandahålls av python3-numpy
-
- dep: python3-numpy2-abi0 [alpha, amd64, arm64, loong64, mips64el, ppc64el, riscv64]
- virtuellt paket som tillhandahålls av python3-numpy
- eller python3-numpy-abi9
- virtuellt paket som tillhandahålls av python3-numpy
-
- dep: python3-pandas [ej hppa, ia64, ppc64, sparc64, x32]
- data structures for "relational" or "labeled" data
-
- dep: python3-pysam (>= 0.20.0+ds-3~) [ej hppa, ia64, ppc64, sparc64, x32]
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: python3-scipy [ej hppa, ia64, ppc64, sparc64, x32]
- scientific tools for Python 3
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- dep: python3-standard-pipes [ej hppa, ia64, ppc64, sparc64, x32]
- pipes Standard Python Lib (Python 3)
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- dep: python3-yaml [ej hppa, ia64, ppc64, sparc64, x32]
- YAML parser and emitter for Python3
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- sug: python3-pairtools-examples (>= 1.0.2)
- Process sequencing data from a Hi-C experiment (examples)
Hämta python3-pairtools
| Arkitektur | Version | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|---|
| alpha (inofficiell anpassning) | 1.1.3-2 | 188,6 kbyte | 927,0 kbyte | [filförteckning] |
| amd64 | 1.1.3-2 | 203,1 kbyte | 840,0 kbyte | [filförteckning] |
| arm64 | 1.1.3-2 | 184,4 kbyte | 924,0 kbyte | [filförteckning] |
| hppa (inofficiell anpassning) | 0.3.0-3.2+b2 | 144,6 kbyte | 640,0 kbyte | [filförteckning] |
| ia64 (inofficiell anpassning) | 0.3.0-3.2+b1 | 137,3 kbyte | 612,0 kbyte | [filförteckning] |
| loong64 (inofficiell anpassning) | 1.1.3-2 | 194,3 kbyte | 924,0 kbyte | [filförteckning] |
| m68k (inofficiell anpassning) | 1.1.2-1 | 216,9 kbyte | 1.096,0 kbyte | [filförteckning] |
| mips64el | 1.1.3-2 | 180,0 kbyte | 939,0 kbyte | [filförteckning] |
| ppc64 (inofficiell anpassning) | 0.3.0-3.2+b2 | 146,6 kbyte | 752,0 kbyte | [filförteckning] |
| ppc64el | 1.1.3-2 | 196,3 kbyte | 988,0 kbyte | [filförteckning] |
| riscv64 | 1.1.3-2 | 198,1 kbyte | 732,0 kbyte | [filförteckning] |
| sh4 (inofficiell anpassning) | 1.1.2-1 | 279,6 kbyte | 1.312,0 kbyte | [filförteckning] |
| sparc64 (inofficiell anpassning) | 0.3.0-3.2+b2 | 125,9 kbyte | 2.292,0 kbyte | [filförteckning] |
| x32 (inofficiell anpassning) | 0.3.0-3.2+b1 | 121,6 kbyte | 405,0 kbyte | [filförteckning] |