[ Källkod: prime-phylo ]
Paket: prime-phylo (1.0.11-14 och andra)
Länkar för prime-phylo
Debianresurser:
Hämta källkodspaketet prime-phylo:
Ansvariga:
- Debian Med Packaging Team (QA-sida, E-postarkiv)
- Erik Sjolund (QA-sida)
- Andreas Tille (QA-sida)
- Étienne Mollier (QA-sida)
Externa resurser:
- Hemsida [prime.sbc.su.se]
Liknande paket:
bayesian estimation of gene trees taking the species tree into account
PrIME (Probabilistic Integrated Models of Evolution) is a package supporting inference of evolutionary parameters in a Bayesian framework using Markov chain Monte Carlo simulation. A distinguishing feature of PrIME is that the species tree is taken into account when analyzing gene trees.
The input data to PrIME is a multiple sequence alignment in FASTA format and the output data contains trees in Newick format.
Andra paket besläktade med prime-phylo
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- dep: libblas3
- Basic Linear Algebra Reference implementations, shared library
- eller libblas.so.3
- virtuellt paket som tillhandahålls av libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
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- dep: libboost-mpi1.74.0 (>= 1.74.0+ds1) [x32]
- C++ interface to the Message Passing Interface (MPI)
-
- dep: libboost-mpi1.83.0 (>= 1.83.0) [ej x32]
- C++ interface to the Message Passing Interface (MPI)
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- dep: libboost-serialization1.74.0 (>= 1.74.0+ds1) [x32]
- serialization library for C++
-
- dep: libboost-serialization1.83.0 (>= 1.83.0) [ej x32]
- serialization library for C++
-
- dep: libc6 (>= 2.34) [hppa, m68k]
- GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
- dep: libc6 (>= 2.37) [sh4]
- dep: libc6 (>= 2.38) [ej alpha, hppa, ia64, loong64, m68k, sh4]
- dep: libc6 (>= 2.41) [loong64]
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- dep: libc6.1 (>= 2.37) [ia64]
- GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6.1-udeb
- dep: libc6.1 (>= 2.38) [alpha]
-
- dep: libgcc-s1 (>= 15.2.0-4) [loong64]
- GCC stödbibliotek
- dep: libgcc-s1 (>= 3.0) [amd64, ppc64el, s390x, x32]
- dep: libgcc-s1 (>= 3.4) [alpha, sh4, sparc64]
- dep: libgcc-s1 (>= 3.4.4) [ppc64]
- dep: libgcc-s1 (>= 4.2) [ia64]
- dep: libgcc-s1 (>= 4.5) [arm64, mips64el, riscv64]
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- dep: libgcc-s2 (>= 4.2.1) [m68k]
- GCC stödbibliotek
-
- dep: libgcc-s4 (>= 4.1.1) [hppa]
- GCC stödbibliotek
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- dep: liblapack3
- Library of linear algebra routines 3 - shared version
- eller liblapack.so.3
- virtuellt paket som tillhandahålls av libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
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- dep: libopenmpi3t64 (>= 4.1.6) [hppa, ia64, m68k, sh4, x32]
- high performance message passing library -- shared library
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- dep: libopenmpi40 (>= 5.0.8) [ej hppa, ia64, m68k, sh4, x32]
- high performance message passing library -- shared library
-
- dep: libstdc++6 (>= 13.1) [hppa, ia64, m68k, sh4]
- GNU standardbibliotek v3 för C++
- dep: libstdc++6 (>= 14) [ej alpha, hppa, ia64, m68k, sh4]
- dep: libstdc++6 (>= 15.2.0-4) [alpha]
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- dep: libunwind8 [ia64]
- library to determine the call-chain of a program - runtime
-
- dep: libxml2 (>= 2.7.4) [hppa, ia64, m68k, sh4, x32]
- GNOME XML library
-
- dep: libxml2-16 (>= 2.14.1) [ej hppa, ia64, m68k, sh4, x32]
- GNOME XML library
-
- dep: perl
- Larry Wall's Practical Extraction and Report Language
-
- sug: mafft
- Multiple alignment program for amino acid or nucleotide sequences
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- sug: mrbayes
- Bayesian Inference of Phylogeny
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- sug: muscle
- Multiple alignment program of protein sequences
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- sug: njplot
- phylogenetic tree drawing program
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- sug: phyml
- Phylogenetic estimation using Maximum Likelihood
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- sug: probalign
- multiple sequence alignment using partition function posterior probabilities
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- sug: python3-biopython
- Python3 library for bioinformatics
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- sug: raxml
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
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- sug: treeviewx
- Displays and prints phylogenetic trees
Hämta prime-phylo
| Arkitektur | Version | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|---|
| alpha (inofficiell anpassning) | 1.0.11-14 | 735,8 kbyte | 3.598,0 kbyte | [filförteckning] |
| amd64 | 1.0.11-14 | 814,1 kbyte | 3.116,0 kbyte | [filförteckning] |
| arm64 | 1.0.11-14 | 700,0 kbyte | 3.255,0 kbyte | [filförteckning] |
| hppa (inofficiell anpassning) | 1.0.11-11 | 818,0 kbyte | 3.309,0 kbyte | [filförteckning] |
| ia64 (inofficiell anpassning) | 1.0.11-11 | 892,6 kbyte | 5.266,0 kbyte | [filförteckning] |
| loong64 (inofficiell anpassning) | 1.0.11-14 | 760,2 kbyte | 3.317,0 kbyte | [filförteckning] |
| m68k (inofficiell anpassning) | 1.0.11-11 | 789,0 kbyte | 2.992,0 kbyte | [filförteckning] |
| mips64el | 1.0.11-14 | 702,6 kbyte | 3.639,0 kbyte | [filförteckning] |
| ppc64 (inofficiell anpassning) | 1.0.11-14 | 793,1 kbyte | 4.024,0 kbyte | [filförteckning] |
| ppc64el | 1.0.11-14 | 813,4 kbyte | 3.767,0 kbyte | [filförteckning] |
| riscv64 | 1.0.11-14 | 793,1 kbyte | 2.467,0 kbyte | [filförteckning] |
| s390x | 1.0.11-14 | 775,3 kbyte | 3.095,0 kbyte | [filförteckning] |
| sh4 (inofficiell anpassning) | 1.0.11-11 | 908,2 kbyte | 3.255,0 kbyte | [filförteckning] |
| sparc64 (inofficiell anpassning) | 1.0.11-14 | 635,6 kbyte | 13.512,0 kbyte | [filförteckning] |
| x32 (inofficiell anpassning) | 1.0.11-12 | 842,2 kbyte | 2.935,0 kbyte | [filförteckning] |