[ Källkod: prime-phylo ]
Paket: prime-phylo (1.0.11-14)
Länkar för prime-phylo
Debianresurser:
Hämta källkodspaketet prime-phylo:
Ansvariga:
- Debian Med Packaging Team (QA-sida, E-postarkiv)
- Erik Sjolund (QA-sida)
- Andreas Tille (QA-sida)
- Étienne Mollier (QA-sida)
Externa resurser:
- Hemsida [prime.sbc.su.se]
Liknande paket:
bayesian estimation of gene trees taking the species tree into account
PrIME (Probabilistic Integrated Models of Evolution) is a package supporting inference of evolutionary parameters in a Bayesian framework using Markov chain Monte Carlo simulation. A distinguishing feature of PrIME is that the species tree is taken into account when analyzing gene trees.
The input data to PrIME is a multiple sequence alignment in FASTA format and the output data contains trees in Newick format.
Andra paket besläktade med prime-phylo
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- dep: libblas3
- Basic Linear Algebra Reference implementations, shared library
- eller libblas.so.3
- virtuellt paket som tillhandahålls av libblas3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
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- dep: libboost-mpi1.83.0 (>= 1.83.0)
- C++ interface to the Message Passing Interface (MPI)
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- dep: libboost-serialization1.83.0 (>= 1.83.0)
- serialization library for C++
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- dep: libc6 (>= 2.38)
- GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [ej arm64, riscv64]
- GCC stödbibliotek
- dep: libgcc-s1 (>= 4.5) [arm64, riscv64]
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- dep: liblapack3
- Library of linear algebra routines 3 - shared version
- eller liblapack.so.3
- virtuellt paket som tillhandahålls av liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
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- dep: libopenmpi40 (>= 5.0.8)
- high performance message passing library -- shared library
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- dep: libstdc++6 (>= 14)
- GNU standardbibliotek v3 för C++
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- dep: libxml2-16 (>= 2.14.1)
- GNOME XML library
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- sug: mafft
- Multiple alignment program for amino acid or nucleotide sequences
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- sug: mrbayes
- Bayesian Inference of Phylogeny
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- sug: muscle
- Multiple alignment program of protein sequences
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- sug: njplot
- phylogenetic tree drawing program
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- sug: phyml
- Phylogenetic estimation using Maximum Likelihood
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- sug: probalign
- multiple sequence alignment using partition function posterior probabilities
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- sug: python3-biopython
- Python3 library for bioinformatics
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- sug: raxml
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
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- sug: treeviewx
- Displays and prints phylogenetic trees
Hämta prime-phylo
| Arkitektur | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|
| amd64 | 814,1 kbyte | 3.116,0 kbyte | [filförteckning] |
| arm64 | 700,0 kbyte | 3.255,0 kbyte | [filförteckning] |
| ppc64el | 813,4 kbyte | 3.767,0 kbyte | [filförteckning] |
| riscv64 | 793,1 kbyte | 2.467,0 kbyte | [filförteckning] |
| s390x | 775,3 kbyte | 3.095,0 kbyte | [filförteckning] |