[ Bron: prime-phylo ]
Pakket: prime-phylo (1.0.11-14 en anderen)
Verwijzigingen voor prime-phylo
Debian bronnen:
Het bronpakket prime-phylo downloaden:
Beheerders:
- Debian Med Packaging Team (QA-pagina, Mailarchief)
- Erik Sjolund (QA-pagina)
- Andreas Tille (QA-pagina)
- Étienne Mollier (QA-pagina)
Externe bronnen:
- Homepage [prime.sbc.su.se]
Vergelijkbare pakketten:
bayesian estimation of gene trees taking the species tree into account
PrIME (Probabilistic Integrated Models of Evolution) is a package supporting inference of evolutionary parameters in a Bayesian framework using Markov chain Monte Carlo simulation. A distinguishing feature of PrIME is that the species tree is taken into account when analyzing gene trees.
The input data to PrIME is a multiple sequence alignment in FASTA format and the output data contains trees in Newick format.
Andere aan prime-phylo gerelateerde pakketten
|
|
|
|
-
- dep: libblas3
- Basic Linear Algebra Reference implementations, shared library
- of libblas.so.3
- virtueel pakket geboden door libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
-
- dep: libboost-mpi1.74.0 (>= 1.74.0+ds1) [x32]
- C++ interface to the Message Passing Interface (MPI)
-
- dep: libboost-mpi1.83.0 (>= 1.83.0) [niet x32]
- C++ interface to the Message Passing Interface (MPI)
-
- dep: libboost-serialization1.74.0 (>= 1.74.0+ds1) [x32]
- serialization library for C++
-
- dep: libboost-serialization1.83.0 (>= 1.83.0) [niet x32]
- serialization library for C++
-
- dep: libc6 (>= 2.34) [hppa, m68k]
- GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb
- dep: libc6 (>= 2.37) [sh4]
- dep: libc6 (>= 2.38) [niet alpha, hppa, ia64, loong64, m68k, sh4]
- dep: libc6 (>= 2.41) [loong64]
-
- dep: libc6.1 (>= 2.37) [ia64]
- GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6.1-udeb
- dep: libc6.1 (>= 2.38) [alpha]
-
- dep: libgcc-s1 (>= 15.2.0-4) [loong64]
- GCC support bibliotheek
- dep: libgcc-s1 (>= 3.0) [amd64, ppc64el, s390x, x32]
- dep: libgcc-s1 (>= 3.4) [alpha, sh4, sparc64]
- dep: libgcc-s1 (>= 3.4.4) [ppc64]
- dep: libgcc-s1 (>= 4.2) [ia64]
- dep: libgcc-s1 (>= 4.5) [arm64, mips64el, riscv64]
-
- dep: libgcc-s2 (>= 4.2.1) [m68k]
- GCC support bibliotheek
-
- dep: libgcc-s4 (>= 4.1.1) [hppa]
- GCC support bibliotheek
-
- dep: liblapack3
- Library of linear algebra routines 3 - shared version
- of liblapack.so.3
- virtueel pakket geboden door libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
-
- dep: libopenmpi3t64 (>= 4.1.6) [hppa, ia64, m68k, sh4, x32]
- high performance message passing library -- shared library
-
- dep: libopenmpi40 (>= 5.0.8) [niet hppa, ia64, m68k, sh4, x32]
- high performance message passing library -- shared library
-
- dep: libstdc++6 (>= 13.1) [hppa, ia64, m68k, sh4]
- GNU Standard C++ Library v3
- dep: libstdc++6 (>= 14) [niet alpha, hppa, ia64, m68k, sh4]
- dep: libstdc++6 (>= 15.2.0-4) [alpha]
-
- dep: libunwind8 [ia64]
- library to determine the call-chain of a program - runtime
-
- dep: libxml2 (>= 2.7.4) [hppa, ia64, m68k, sh4, x32]
- GNOME XML library
-
- dep: libxml2-16 (>= 2.14.1) [niet hppa, ia64, m68k, sh4, x32]
- GNOME XML library
-
- dep: perl
- Larry Wall's Practical Extraction and Report Language
-
- sug: mafft
- Multiple alignment program for amino acid or nucleotide sequences
-
- sug: mrbayes
- Bayesian Inference of Phylogeny
-
- sug: muscle
- Multiple alignment program of protein sequences
-
- sug: njplot
- phylogenetic tree drawing program
-
- sug: phyml
- Phylogenetic estimation using Maximum Likelihood
-
- sug: probalign
- multiple sequence alignment using partition function posterior probabilities
-
- sug: python3-biopython
- Python3 library for bioinformatics
-
- sug: raxml
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
-
- sug: treeviewx
- Displays and prints phylogenetic trees
prime-phylo downloaden
| Platform | Versie | Pakketgrootte | Geïnstalleerde grootte | Bestanden |
|---|---|---|---|---|
| alpha (unofficial port) | 1.0.11-14 | 735,8 kB | 3.598,0 kB | [overzicht] |
| amd64 | 1.0.11-14 | 814,1 kB | 3.116,0 kB | [overzicht] |
| arm64 | 1.0.11-14 | 700,0 kB | 3.255,0 kB | [overzicht] |
| hppa (unofficial port) | 1.0.11-11 | 818,0 kB | 3.309,0 kB | [overzicht] |
| ia64 (unofficial port) | 1.0.11-11 | 892,6 kB | 5.266,0 kB | [overzicht] |
| loong64 (unofficial port) | 1.0.11-14 | 760,2 kB | 3.317,0 kB | [overzicht] |
| m68k (unofficial port) | 1.0.11-11 | 789,0 kB | 2.992,0 kB | [overzicht] |
| mips64el | 1.0.11-14 | 702,6 kB | 3.639,0 kB | [overzicht] |
| ppc64 (unofficial port) | 1.0.11-14 | 793,1 kB | 4.024,0 kB | [overzicht] |
| ppc64el | 1.0.11-14 | 813,4 kB | 3.767,0 kB | [overzicht] |
| riscv64 | 1.0.11-14 | 793,1 kB | 2.467,0 kB | [overzicht] |
| s390x | 1.0.11-14 | 775,3 kB | 3.095,0 kB | [overzicht] |
| sh4 (unofficial port) | 1.0.11-11 | 908,2 kB | 3.255,0 kB | [overzicht] |
| sparc64 (unofficial port) | 1.0.11-14 | 635,6 kB | 13.512,0 kB | [overzicht] |
| x32 (unofficial port) | 1.0.11-12 | 842,2 kB | 2.935,0 kB | [overzicht] |