Pakket: prime-phylo (1.0.11-11)

Verwijzigingen voor prime-phylo

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Het bronpakket prime-phylo downloaden:

Beheerders:

Externe bronnen:

Homepage [prime.sbc.su.se]

Vergelijkbare pakketten:

bayesian estimation of gene trees taking the species tree into account

PrIME (Probabilistic Integrated Models of Evolution) is a package supporting inference of evolutionary parameters in a Bayesian framework using Markov chain Monte Carlo simulation. A distinguishing feature of PrIME is that the species tree is taken into account when analyzing gene trees.

The input data to PrIME is a multiple sequence alignment in FASTA format and the output data contains trees in Newick format.

Andere aan prime-phylo gerelateerde pakketten

depends

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dep: libblas3

Basic Linear Algebra Reference implementations, shared library

of libblas.so.3

virtueel pakket geboden door libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
dep: libboost-mpi1.83.0 (>= 1.83.0)

C++ interface to the Message Passing Interface (MPI)
dep: libboost-serialization1.83.0 (>= 1.83.0)

serialization library for C++
dep: libc6 (>= 2.34)

GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb
dep: libgcc-s1 (>= 3.0) [amd64, i386, s390x]

GCC support bibliotheek

dep: libgcc-s1 (>= 3.4.4) [ppc64el]

dep: libgcc-s1 (>= 3.5) [armel, armhf]

dep: libgcc-s1 (>= 4.5) [arm64, mips64el]
dep: liblapack3

Library of linear algebra routines 3 - shared version

of liblapack.so.3

virtueel pakket geboden door liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
dep: libopenmpi3t64 (>= 4.1.6)

high performance message passing library -- shared library
dep: libstdc++6 (>= 13.1)

GNU Standard C++ Library v3
dep: libxml2 (>= 2.7.4)

GNOME XML library
dep: perl

Larry Wall's Practical Extraction and Report Language

sug: mafft

Multiple alignment program for amino acid or nucleotide sequences
sug: mrbayes

Bayesian Inference of Phylogeny
sug: muscle

Multiple alignment program of protein sequences
sug: njplot

phylogenetic tree drawing program
sug: phyml

Phylogenetic estimation using Maximum Likelihood
sug: probalign

multiple sequence alignment using partition function posterior probabilities
sug: python3-biopython

Python3 library for bioinformatics
sug: raxml

Randomized Axelerated Maximum Likelihood of phylogenetic trees
sug: treeviewx

Displays and prints phylogenetic trees

prime-phylo downloaden

Pakket downloaden voor alle beschikbare platforms
Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	825,5 kB	3.220,0 kB	[overzicht]
arm64	734,7 kB	3.379,0 kB	[overzicht]
armel	695,0 kB	2.648,0 kB	[overzicht]
armhf	707,0 kB	2.092,0 kB	[overzicht]
i386	884,5 kB	3.176,0 kB	[overzicht]
mips64el	691,4 kB	3.788,0 kB	[overzicht]
ppc64el	820,6 kB	3.891,0 kB	[overzicht]
s390x	798,7 kB	3.247,0 kB	[overzicht]