Paketti: prime-phylo (1.0.11-13 ja muut)

Links for prime-phylo

Debian-palvelut:

Imuroi lähdekoodipaketti prime-phylo:

Ylläpitäjät:

External Resources:

Kotisivu [prime.sbc.su.se]

Samankaltaisia paketteja:

bayesian estimation of gene trees taking the species tree into account

PrIME (Probabilistic Integrated Models of Evolution) is a package supporting inference of evolutionary parameters in a Bayesian framework using Markov chain Monte Carlo simulation. A distinguishing feature of PrIME is that the species tree is taken into account when analyzing gene trees.

The input data to PrIME is a multiple sequence alignment in FASTA format and the output data contains trees in Newick format.

Muut pakettiin prime-phylo liittyvät paketit

depends

recommends

suggests

enhances

dep: libblas3

Basic Linear Algebra Reference implementations, shared library

tai libblas.so.3

näennäispaketti, jonka toteuttaa libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
dep: libboost-mpi1.83.0 (>= 1.83.0)

C++ interface to the Message Passing Interface (MPI)
dep: libboost-serialization1.83.0 (>= 1.83.0)

serialization library for C++
dep: libc6 (>= 2.38)

GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
dep: libgcc-s1 (>= 3.0) [amd64, s390x]

GCC:n apukirjasto

dep: libgcc-s1 (>= 3.4.4) [ppc64el]

dep: libgcc-s1 (>= 4.5) [arm64, riscv64]
dep: liblapack3

Library of linear algebra routines 3 - shared version

tai liblapack.so.3

näennäispaketti, jonka toteuttaa liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
dep: libopenmpi40 (>= 5.0.6)

high performance message passing library -- shared library
dep: libstdc++6 (>= 14)

GNU standardi C++ -kirjasto, versio 3
dep: libxml2 (>= 2.7.4)

XML-kirjasto Gnomelle
dep: perl

Larry Wallin kieli tekstitiedostojen analysointia ja raportointia varten

sug: mafft

Multiple alignment program for amino acid or nucleotide sequences
sug: mrbayes

Bayesian Inference of Phylogeny
sug: muscle

Multiple alignment program of protein sequences
sug: njplot

phylogenetic tree drawing program
sug: phyml

Phylogenetic estimation using Maximum Likelihood
sug: probalign

multiple sequence alignment using partition function posterior probabilities
sug: python3-biopython

Python3 library for bioinformatics
sug: raxml

Randomized Axelerated Maximum Likelihood of phylogenetic trees
sug: treeviewx

Displays and prints phylogenetic trees

Imuroi prime-phylo

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
amd64	1.0.11-13+b1	825.4 kt	3,160.0 kt	[tiedostoluettelo]
arm64	1.0.11-13+b1	727.5 kt	3,319.0 kt	[tiedostoluettelo]
ppc64el	1.0.11-13+b1	808.5 kt	3,767.0 kt	[tiedostoluettelo]
riscv64	1.0.11-13+b1	794.1 kt	2,527.0 kt	[tiedostoluettelo]
s390x	1.0.11-13+b1	789.2 kt	3,159.0 kt	[tiedostoluettelo]