Paketti: prime-phylo (1.0.11-10)

Links for prime-phylo

Debian-palvelut:

Imuroi lähdekoodipaketti prime-phylo:

Ylläpitäjät:

External Resources:

Kotisivu [prime.sbc.su.se]

Samankaltaisia paketteja:

bayesian estimation of gene trees taking the species tree into account

PrIME (Probabilistic Integrated Models of Evolution) is a package supporting inference of evolutionary parameters in a Bayesian framework using Markov chain Monte Carlo simulation. A distinguishing feature of PrIME is that the species tree is taken into account when analyzing gene trees.

The input data to PrIME is a multiple sequence alignment in FASTA format and the output data contains trees in Newick format.

Muut pakettiin prime-phylo liittyvät paketit

depends

recommends

suggests

enhances

dep: libblas3

Basic Linear Algebra Reference implementations, shared library

tai libblas.so.3

näennäispaketti, jonka toteuttaa libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
dep: libboost-mpi1.74.0 (>= 1.74.0)

C++ interface to the Message Passing Interface (MPI)
dep: libboost-serialization1.74.0 (>= 1.74.0)

serialization library for C++
dep: libc6 (>= 2.29)

GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
dep: libgcc-s1 (>= 3.0) [amd64, i386, mipsel, s390x]

GCC:n apukirjasto

dep: libgcc-s1 (>= 3.4.4) [ppc64el]

dep: libgcc-s1 (>= 3.5) [armel, armhf]

dep: libgcc-s1 (>= 4.5) [arm64, mips64el]
dep: liblapack3

Library of linear algebra routines 3 - shared version

tai liblapack.so.3

näennäispaketti, jonka toteuttaa libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
dep: libopenmpi3 (>= 4.1.0)

high performance message passing library -- shared library
dep: libstdc++6 (>= 9)

GNU standardi C++ -kirjasto, versio 3
dep: libxml2 (>= 2.7.4)

XML-kirjasto Gnomelle
dep: perl

Larry Wallin kieli tekstitiedostojen analysointia ja raportointia varten

sug: mafft

Multiple alignment program for amino acid or nucleotide sequences
sug: mrbayes

Bayesian Inference of Phylogeny
sug: muscle

Multiple alignment program of protein sequences
sug: njplot

phylogenetic tree drawing program
sug: phyml

Phylogenetic estimation using Maximum Likelihood
sug: probalign

multiple sequence alignment using partition function posterior probabilities
sug: python3-biopython

Python3 library for bioinformatics
sug: raxml

Randomized Axelerated Maximum Likelihood of phylogenetic trees
sug: treeviewx

Displays and prints phylogenetic trees

Imuroi prime-phylo

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	806.5 kt	3,148.0 kt	[tiedostoluettelo]
arm64	718.7 kt	2,956.0 kt	[tiedostoluettelo]
armel	677.1 kt	2,533.0 kt	[tiedostoluettelo]
armhf	691.6 kt	2,013.0 kt	[tiedostoluettelo]
i386	869.1 kt	3,137.0 kt	[tiedostoluettelo]
mips64el	686.7 kt	3,525.0 kt	[tiedostoluettelo]
mipsel	691.5 kt	3,255.0 kt	[tiedostoluettelo]
ppc64el	812.1 kt	3,828.0 kt	[tiedostoluettelo]
s390x	719.0 kt	3,176.0 kt	[tiedostoluettelo]