[ Source: ampliconnoise ]
Package: ampliconnoise (1.29-11)
Links for ampliconnoise
Debian Resources:
Download Source Package ampliconnoise:
Maintainers:
- Debian Med Packaging Team (QA Page, Mail Archive)
- Tim Booth (QA Page)
- Andreas Tille (QA Page)
- Pranav Ballaney (QA Page)
External Resources:
- Homepage [github.com]
Similar packages:
removal of noise from 454 sequenced PCR amplicons
AmpliconNoise is a package of applications to clean up high-throughput sequence data. It consists of three main parts:
Pyronoise - does flowgram-based clustering to spot misreads SeqNoise - removes PCR point mutations Perseus - removes PCR chimeras without the need for a set of reference sequences
Previously there was a standalone "Pyronoise" by the same authors and this package includes an updated version. There is also a "Denoiser" in Qiime which is related but distinct.
Other Packages Related to ampliconnoise
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- dep: libc6 (>= 2.34) [not alpha, ia64, sh4]
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.37) [sh4]
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- dep: libc6.1 (>= 2.34) [alpha]
- GNU C Library: Shared libraries
also a virtual package provided by libc6.1-udeb
- dep: libc6.1 (>= 2.37) [ia64]
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- dep: libgsl27 (>= 2.7.1)
- GNU Scientific Library (GSL) -- library package
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- dep: libgslcblas0 (>= 2.7.1) [sparc64]
- GNU Scientific Library (GSL) -- blas library package
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- dep: libopenmpi3t64 (>= 4.1.6)
- high performance message passing library -- shared library
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- dep: mafft
- Multiple alignment program for amino acid or nucleotide sequences
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- rec: openmpi-bin
- high performance message passing library -- binaries
Download ampliconnoise
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| alpha (unofficial port) | 1,073.8 kB | 2,525.0 kB | [list of files] |
| amd64 | 1,086.3 kB | 2,037.0 kB | [list of files] |
| arm64 | 1,075.1 kB | 2,397.0 kB | [list of files] |
| armel | 1,066.5 kB | 1,956.0 kB | [list of files] |
| armhf | 1,061.5 kB | 1,824.0 kB | [list of files] |
| hppa (unofficial port) | 1,062.8 kB | 1,925.0 kB | [list of files] |
| i386 | 1,077.3 kB | 2,000.0 kB | [list of files] |
| ia64 (unofficial port) | 1,096.8 kB | 2,314.0 kB | [list of files] |
| m68k (unofficial port) | 1,060.0 kB | 1,928.0 kB | [list of files] |
| mips64el | 1,072.6 kB | 2,419.0 kB | [list of files] |
| ppc64 (unofficial port) | 1,089.0 kB | 2,589.0 kB | [list of files] |
| ppc64el | 1,094.5 kB | 2,589.0 kB | [list of files] |
| riscv64 | 1,082.4 kB | 1,905.0 kB | [list of files] |
| s390x | 1,098.1 kB | 2,085.0 kB | [list of files] |
| sh4 (unofficial port) | 1,094.3 kB | 2,384.0 kB | [list of files] |
| sparc64 (unofficial port) | 1,065.6 kB | 14,888.0 kB | [list of files] |
| x32 (unofficial port) | 1,083.2 kB | 1,992.0 kB | [list of files] |