Pakket: ampliconnoise (1.29-16 en anderen)

Verwijzigingen voor ampliconnoise

Debian bronnen:

Het bronpakket ampliconnoise downloaden:

Beheerders:

Externe bronnen:

Homepage [github.com]

Vergelijkbare pakketten:

removal of noise from 454 sequenced PCR amplicons

AmpliconNoise is a package of applications to clean up high-throughput sequence data. It consists of three main parts:

Pyronoise - does flowgram-based clustering to spot misreads SeqNoise - removes PCR point mutations Perseus - removes PCR chimeras without the need for a set of reference sequences

Previously there was a standalone "Pyronoise" by the same authors and this package includes an updated version. There is also a "Denoiser" in Qiime which is related but distinct.

Tags: Role: Program

Andere aan ampliconnoise gerelateerde pakketten

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recommends

suggests

enhances

dep: libc6 (>= 2.38) [niet alpha, ia64, loong64, sh4]

GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb

dep: libc6 (>= 2.41) [loong64, sh4]
dep: libc6.1 (>= 2.37) [ia64]

GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6.1-udeb

dep: libc6.1 (>= 2.38) [alpha]
dep: libgsl27 (>= 2.7.1) [ia64]

GNU Scientific Library (GSL) -- library package
dep: libgsl28 (>= 2.8+dfsg) [niet ia64]

GNU Scientific Library (GSL) -- library package
dep: libmpich12 [armel, armhf, hppa, i386, m68k, sh4]

Shared libraries for MPICH

dep: libmpich12 (>= 4.2.0) [x32]
dep: libopenmpi3t64 (>= 4.1.6) [ia64]

high performance message passing library -- shared library
dep: libopenmpi40 (>= 5.0.8) [niet armel, armhf, hppa, i386, ia64, m68k, sh4, x32]

high performance message passing library -- shared library
dep: mafft

Multiple alignment program for amino acid or nucleotide sequences

rec: mpi-default-bin [niet ia64]

Standard MPI runtime programs (metapackage)
rec: openmpi-bin [ia64]

high performance message passing library -- binaries

ampliconnoise downloaden

Pakket downloaden voor alle beschikbare platforms
Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	1.29-16	1.077,3 kB	2.527,0 kB	[overzicht]
amd64	1.29-16	1.085,6 kB	2.055,0 kB	[overzicht]
arm64	1.29-16	1.075,0 kB	2.399,0 kB	[overzicht]
armel	1.29-16	1.064,1 kB	2.386,0 kB	[overzicht]
armhf	1.29-16	1.058,9 kB	2.386,0 kB	[overzicht]
hppa (unofficial port)	1.29-16	1.065,1 kB	1.930,0 kB	[overzicht]
i386	1.29-16	1.081,8 kB	2.054,0 kB	[overzicht]
ia64 (unofficial port)	1.29-11	1.096,8 kB	2.314,0 kB	[overzicht]
loong64 (unofficial port)	1.29-16	1.081,8 kB	2.527,0 kB	[overzicht]
m68k (unofficial port)	1.29-16	1.054,2 kB	1.930,0 kB	[overzicht]
mips64el	1.29-16	1.072,7 kB	2.421,0 kB	[overzicht]
ppc64 (unofficial port)	1.29-16	1.087,2 kB	2.591,0 kB	[overzicht]
ppc64el	1.29-16	1.097,3 kB	2.591,0 kB	[overzicht]
riscv64	1.29-16	1.079,1 kB	1.907,0 kB	[overzicht]
s390x	1.29-16	1.096,0 kB	2.099,0 kB	[overzicht]
sh4 (unofficial port)	1.29-16	1.084,4 kB	2.386,0 kB	[overzicht]
sparc64 (unofficial port)	1.29-16	1.066,1 kB	14.890,0 kB	[overzicht]
x32 (unofficial port)	1.29-16	1.078,5 kB	2.010,0 kB	[overzicht]