[ buster ]
[ 原始碼： cyvcf2 ]
套件：python-cyvcf2（0.10.4-1）
VCF parser based on htslib (Python 2)
This modules allows fast parsing of VCF and BCF including region-queries with Python. This is essential for efficient analyses of nucleotide variation with Python on high-throughput sequencing data.
cyvcf2 is a cython wrapper around htslib. Attributes like variant.gt_ref_depths return a numpy array directly so they are immediately ready for downstream use.
This package installs the library for Python 2.
其他與 python-cyvcf2 有關的套件
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- dep: libbz2-1.0
- high-quality block-sorting file compressor library - runtime
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- dep: libc6 (>= 2.17)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libcurl3-gnutls (>= 7.16.2)
- easy-to-use client-side URL transfer library (GnuTLS flavour)
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- dep: libhts2 (>= 1.2.1)
- C library for high-throughput sequencing data formats
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- dep: liblzma5 (>= 5.1.1alpha+20110809)
- XZ-format compression library
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- dep: libssl1.1 (>= 1.1.0)
- Secure Sockets Layer toolkit - shared libraries
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- dep: python
- interactive high-level object-oriented language (Python2 version)
- dep: python (<< 2.8)
- dep: python (>= 2.7~)
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- dep: python-numpy (>= 1:1.16.0~rc1)
- Numerical Python adds a fast array facility to the Python language
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- dep: python-numpy-abi9
- 本虛擬套件由這些套件填實： python-numpy
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- dep: zlib1g (>= 1:1.1.4)
- 壓縮函式庫 - 跑程式時用(runtime)
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- sug: python-cyvcf2-doc
- 套件暫時不可用