[ Källkod: sourmash ]
Paket: sourmash (4.9.4-3 och andra)
Länkar för sourmash
Debianresurser:
Hämta källkodspaketet sourmash:
Ansvariga:
- Debian Med Packaging Team (QA-sida, E-postarkiv)
- Michael R. Crusoe (QA-sida)
- Debian Rust Maintainers (QA-sida)
Externa resurser:
- Hemsida [github.com]
Liknande paket:
tools for comparing DNA sequences with MinHash sketches
Compute MinHash signatures for nucleotide (DNA/RNA) and protein sequences.
MinHash sketches provide a lightweight way to store “signatures” of large DNA or RNA sequence collections, and then compare or search them using a Jaccard index. MinHash sketches can be used to identify samples, find similar samples, identify data sets with shared sequences, and build phylogenetic trees (Ondov et al. 2015).
sourmash provides a command line script, a Python library, and a CPython module for MinHash sketches.
These tools provide functionality previously handled by the 'khmer' package.
Andra paket besläktade med sourmash
|
|
|
|
-
- dep: libc6 (>= 2.34) [ej loong64, ppc64el]
- GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
- dep: libc6 (>= 2.39) [ppc64el]
- dep: libc6 (>= 2.41) [loong64]
-
- dep: libgcc-s1 (>= 4.2)
- GCC stödbibliotek
-
- dep: liblzma5 (>= 5.1.1alpha+20120614)
- XZ-format compression library
-
- dep: librocksdb9.10 (>= 9.10.0)
- persistent Key-Value Store for Flash and RAM Storage
-
- dep: libzstd1 (>= 1.5.5)
- fast lossless compression algorithm
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (>= 3~)
-
- dep: python3-bitstring
- Python module for manipulation of binary data (Python 3)
-
- dep: python3-cachetools
- extensible memoizing collections and decorators for Python 3
-
- dep: python3-cffi-backend-api-max (>= 9729)
- Paketet inte tillgängligt
-
- dep: python3-cffi-backend-api-min (<= 9729)
- Paketet inte tillgängligt
-
- dep: python3-deprecation
- Library to handle automated deprecations
-
- dep: python3-matplotlib
- Python based plotting system in a style similar to Matlab
-
- dep: python3-numpy
- Python library for numerical computations (Python 3)
-
- dep: python3-scipy
- scientific tools for Python 3
-
- dep: python3-screed
- short nucleotide read sequence utils in Python 3
Hämta sourmash
| Arkitektur | Version | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|---|
| amd64 | 4.9.4-3 | 825,9 kbyte | 2.824,0 kbyte | [filförteckning] |
| arm64 | 4.9.4-3 | 747,2 kbyte | 2.684,0 kbyte | [filförteckning] |
| loong64 (inofficiell anpassning) | 4.9.4-2 | 753,9 kbyte | 2.876,0 kbyte | [filförteckning] |
| mips64el | 4.9.4-3 | 801,0 kbyte | 3.409,0 kbyte | [filförteckning] |
| ppc64el | 4.9.4-3 | 822,1 kbyte | 3.132,0 kbyte | [filförteckning] |
| riscv64 | 4.9.4-3 | 804,1 kbyte | 2.589,0 kbyte | [filförteckning] |