[ Source: sourmash ]
Package: sourmash (4.9.4-3 and others)
Links for sourmash
Debian Resources:
Download Source Package sourmash:
Maintainers:
- Debian Med Packaging Team (QA Page, Mail Archive)
- Michael R. Crusoe (QA Page)
- Debian Rust Maintainers (QA Page)
External Resources:
- Homepage [github.com]
Similar packages:
tools for comparing DNA sequences with MinHash sketches
Compute MinHash signatures for nucleotide (DNA/RNA) and protein sequences.
MinHash sketches provide a lightweight way to store “signatures” of large DNA or RNA sequence collections, and then compare or search them using a Jaccard index. MinHash sketches can be used to identify samples, find similar samples, identify data sets with shared sequences, and build phylogenetic trees (Ondov et al. 2015).
sourmash provides a command line script, a Python library, and a CPython module for MinHash sketches.
These tools provide functionality previously handled by the 'khmer' package.
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Download sourmash
| Architecture | Version | Package Size | Installed Size | Files |
|---|---|---|---|---|
| amd64 | 4.9.4-3 | 825.9 kB | 2,824.0 kB | [list of files] |
| arm64 | 4.9.4-3 | 747.2 kB | 2,684.0 kB | [list of files] |
| loong64 (unofficial port) | 4.9.4-2 | 753.9 kB | 2,876.0 kB | [list of files] |
| mips64el | 4.9.4-3 | 801.0 kB | 3,409.0 kB | [list of files] |
| ppc64el | 4.9.4-3 | 822.1 kB | 3,132.0 kB | [list of files] |
| riscv64 | 4.9.4-3 | 804.1 kB | 2,589.0 kB | [list of files] |