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[ Source: flye  ]

Package: flye (2.9.6+dfsg-1 and others)

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de novo assembler for single molecule sequencing reads using repeat graphs

Flye is a de novo assembler for single molecule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies. It is designed for a wide range of datasets, from small bacterial projects to large mammalian-scale assemblies. The package represents a complete pipeline: it takes raw PacBio / ONT reads as input and outputs polished contigs. Flye also has a special mode for metagenome assembly.

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Download flye

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 2.9.6+dfsg-1 22,611.2 kB37,054.0 kB [list of files]
amd64 2.9.6+dfsg-1 22,656.0 kB36,932.0 kB [list of files]
arm64 2.9.6+dfsg-1 22,576.1 kB36,731.0 kB [list of files]
ia64 (unofficial port) 2.9.3+dfsg2-1 22,763.6 kB38,428.0 kB [list of files]
loong64 (unofficial port) 2.9.6+dfsg-1 22,603.3 kB36,795.0 kB [list of files]
mips64el 2.9.6+dfsg-1 22,580.3 kB37,035.0 kB [list of files]
ppc64 (unofficial port) 2.9.6+dfsg-1 22,637.7 kB37,179.0 kB [list of files]
ppc64el 2.9.6+dfsg-1 22,648.5 kB37,115.0 kB [list of files]
riscv64 2.9.6+dfsg-1 22,634.8 kB36,479.0 kB [list of files]
s390x 2.9.6+dfsg-1 22,685.6 kB37,087.0 kB [list of files]