Paketti: python3-pairtools (1.1.3-1 ja muut)

Links for python3-pairtools

Debian-palvelut:

Imuroi lähdekoodipaketti pairtools:

Ylläpitäjät:

External Resources:

Kotisivu [github.com]

Samankaltaisia paketteja:

Framework to process sequencing data from a Hi-C experiment

Simple and fast command-line framework to process sequencing data from a Hi-C experiment.

Process pair-end sequence alignments and perform the following operations:

  - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
    sequences of Hi-C DNA molecules
  - Sort .pairs files for downstream analyses
  - Detect, tag and remove PCR/optical duplicates
  - Generate extensive statistics of Hi-C datasets
  - Select Hi-C pairs given flexibly defined criteria
  - Restore .sam alignments from Hi-C pairs

Muut pakettiin python3-pairtools liittyvät paketit

depends

recommends

suggests

enhances

dep: libc6 (>= 2.14) [amd64]

GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb

dep: libc6 (>= 2.17) [arm64, ppc64el]

dep: libc6 (>= 2.27) [riscv64]
dep: libgcc-s1 (>= 3.0)

GCC:n apukirjasto
dep: libstdc++6 (>= 11)

GNU standardi C++ -kirjasto, versio 3
dep: python3

interactive high-level object-oriented language (default python3 version)

dep: python3 (<< 3.14)

dep: python3 (>= 3.13~)
dep: python3-bioframe

library to enable flexible, scalable operations on genomic interval dataframes
dep: python3-click

Command-Line Interface Creation Kit - Python 3.x
dep: python3-numpy

Python library for numerical computations (Python 3)
dep: python3-numpy2-abi0

näennäispaketti, jonka toteuttaa python3-numpy

tai python3-numpy-abi9

Paketti ei saatavilla
dep: python3-pandas

data structures for "relational" or "labeled" data
dep: python3-pysam (>= 0.20.0+ds-3~)

interface for the SAM/BAM sequence alignment and mapping format (Python 3)
dep: python3-scipy

scientific tools for Python 3
dep: python3-standard-pipes

pipes Standard Python Lib (Python 3)
dep: python3-yaml

YAML parser and emitter for Python3

sug: python3-pairtools-examples (>= 1.0.2)

Process sequencing data from a Hi-C experiment (examples)

Imuroi python3-pairtools

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
amd64	1.1.3-1+b1	202.2 kt	833.0 kt	[tiedostoluettelo]
arm64	1.1.3-1+b1	184.7 kt	925.0 kt	[tiedostoluettelo]
ppc64el	1.1.3-1+b1	196.2 kt	989.0 kt	[tiedostoluettelo]
riscv64	1.1.3-1+b1	198.3 kt	733.0 kt	[tiedostoluettelo]