Pakket: python3-pairtools (1.0.3-1)

Verwijzigingen voor python3-pairtools

Debian bronnen:

Het bronpakket pairtools downloaden:

Beheerders:

Externe bronnen:

Homepage [github.com]

Vergelijkbare pakketten:

Framework to process sequencing data from a Hi-C experiment

Simple and fast command-line framework to process sequencing data from a Hi-C experiment.

Process pair-end sequence alignments and perform the following operations:

  - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
    sequences of Hi-C DNA molecules
  - Sort .pairs files for downstream analyses
  - Detect, tag and remove PCR/optical duplicates
  - Generate extensive statistics of Hi-C datasets
  - Select Hi-C pairs given flexibly defined criteria
  - Restore .sam alignments from Hi-C pairs

Andere aan python3-pairtools gerelateerde pakketten

depends

recommends

suggests

enhances

dep: libc6 (>= 2.14) [amd64]

GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb

dep: libc6 (>= 2.17) [arm64, ppc64el]

dep: libc6 (>= 2.4) [niet amd64, arm64, ppc64el]
dep: libgcc-s1 (>= 3.0) [niet armel, armhf]

GCC support bibliotheek

dep: libgcc-s1 (>= 3.5) [armel, armhf]
dep: libstdc++6 (>= 11)

GNU Standard C++ Library v3
dep: python3

interactive high-level object-oriented language (default python3 version)

dep: python3 (<< 3.13)

dep: python3 (>= 3.11~)
dep: python3-bioframe

library to enable flexible, scalable operations on genomic interval dataframes
dep: python3-click

Wrapper around optparse for command line utilities - Python 3.x
dep: python3-numpy (>= 1:1.22.0)

Fast array facility to the Python language (Python 3)
dep: python3-numpy-abi9

virtueel pakket geboden door python3-numpy
dep: python3-pandas

data structures for "relational" or "labeled" data
dep: python3-pysam (>= 0.20.0+ds-3~)

interface for the SAM/BAM sequence alignment and mapping format (Python 3)
dep: python3-scipy

scientific tools for Python 3
dep: python3-yaml

YAML parser and emitter for Python3

sug: python3-pairtools-examples (>= 1.0.2)

Process sequencing data from a Hi-C experiment (examples)

python3-pairtools downloaden

Pakket downloaden voor alle beschikbare platforms
Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	226,4 kB	1.021,0 kB	[overzicht]
arm64	202,3 kB	1.043,0 kB	[overzicht]
armel	199,0 kB	903,0 kB	[overzicht]
armhf	203,9 kB	763,0 kB	[overzicht]
i386	226,5 kB	1.007,0 kB	[overzicht]
mips64el	194,3 kB	1.191,0 kB	[overzicht]
ppc64el	217,0 kB	1.171,0 kB	[overzicht]