Package: ragout (2.3-5 and others)

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Reference-assisteret redskab til ordning af genomrækkefølge

Ragout (Reference-Assisted Genome Ordering UTility) er et værktøj for kromosomniveauopsætning via flere referencer. Givet oprindelig samlingsfragmenter (contigs/scaffolds) og en eller flere relaterede referencer (fuldstændig eller i uddrag) fremstilles en kromosomskalasamling (som et sæt af scaffolds).

Fremgangsmåden er baseret på analyse af genom-omarrangementer (som inversioner eller kromosomale translokationer) mellem inddatagenomer og rekonstruktion af den mest sparsommelige struktur for målgenomet.

Ragout understøtter nu både små og store genomer (i pattedyrskala og -kompleksitet). Samlingen af højt polymorfiske genomer er i øjeblikket begrænset.

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Download ragout

Download for all available architectures
Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	2.3-5	2,068.7 kB	9,728.0 kB	[list of files]
amd64	2.3-5	2,072.9 kB	9,659.0 kB	[list of files]
arm64	2.3-5+b2	2,068.1 kB	9,664.0 kB	[list of files]
armel	2.3-5	2,063.8 kB	9,629.0 kB	[list of files]
armhf	2.3-5	2,066.9 kB	9,585.0 kB	[list of files]
hppa (unofficial port)	2.3-5	2,076.1 kB	9,640.0 kB	[list of files]
i386	2.3-5	2,085.3 kB	9,673.0 kB	[list of files]
ia64 (unofficial port)	2.3-5	2,090.9 kB	9,805.0 kB	[list of files]
loong64 (unofficial port)	2.3-5	2,063.7 kB	9,663.0 kB	[list of files]
m68k (unofficial port)	2.3-5	2,074.2 kB	9,645.0 kB	[list of files]
mips64el	2.3-5	2,072.5 kB	9,801.0 kB	[list of files]
ppc64 (unofficial port)	2.3-5	2,078.8 kB	9,791.0 kB	[list of files]
ppc64el	2.3-5	2,077.4 kB	9,791.0 kB	[list of files]
riscv64	2.3-5	2,072.2 kB	9,607.0 kB	[list of files]
s390x	2.3-5	2,075.7 kB	9,683.0 kB	[list of files]
sh4 (unofficial port)	2.3-5	2,086.8 kB	9,661.0 kB	[list of files]
sparc64 (unofficial port)	2.3-5	2,064.6 kB	11,523.0 kB	[list of files]
x32 (unofficial port)	2.3-5	2,072.7 kB	9,641.0 kB	[list of files]