Paket: atac (0~20150903+r2013-10)
atac için bağlantılar
Debian Kaynakları:
- Hata Raporları
- Developer Information
- Debian Değişim Günlüğü
- Telif Hakkı Dosyası
- Debian Yama Takipçisi
kmer Kaynak Paketini İndir:
- [kmer_0~20150903+r2013-10.dsc]
- [kmer_0~20150903+r2013.orig.tar.gz]
- [kmer_0~20150903+r2013-10.debian.tar.xz]
Geliştiriciler:
Dış Kaynaklar:
- Ana Sayfa [kmer.sourceforge.net]
Benzer paketler:
genome assembly-to-assembly comparison
atac computes a one-to-one pairwise alignment of large DNA sequences. It first finds the unique k-mers in each sequence, chains them to larger blocks, and fills in spaces between blocks. It was written primarily to transfer annotations between different assemblies of the human genome.
The output is a set of ungapped 'matches', and a set of gapped 'runs' formed from the matches. Each match or run associates one sequence with the other sequence. The association is 'unique', in that there is no other (sizeable) associations for either sequence. Thus, large repeats and duplications are not present in the output - they appear as unmapped regions.
Though the output is always pairwise, atac can cache intermediate results to speed a comparisons of multiple sequences.
This package is part of the Kmer suite.
atac ile İlgili Diğer Paketler
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- dep: gnuplot
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ayrıca şunun tarafından sağlanan bir sanal paket gnuplot-nox, gnuplot-qt, gnuplot-x11
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- dep: leaff
- biological sequence library utilities and applications
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- dep: libc6 (>= 2.38)
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ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb
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- dep: libfile-which-perl
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- dep: libgcc-s1 (>= 3.0) [armhf, i386, riscv64 değil]
- GCC support library
- dep: libgcc-s1 (>= 3.4) [riscv64]
- dep: libgcc-s1 (>= 3.5) [armhf]
- dep: libgcc-s1 (>= 4.2) [i386]
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
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- dep: meryl
- in- and out-of-core kmer counting and utilities
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.14)
- dep: python3 (>= 3.13~)
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- dep: python3.13
- Interactive high-level object-oriented language (version 3.13)
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- rec: kmer-examples
- sample data for kmer suite of tools for DNA sequence analysis
atac indir
| Mimari | Paket Boyutu | Kurulu Boyut | Dosyalar |
|---|---|---|---|
| amd64 | 380,0 kB | 2.795,0 kB | [dosya listesi] |
| arm64 | 357,2 kB | 3.363,0 kB | [dosya listesi] |
| armhf | 346,1 kB | 2.893,0 kB | [dosya listesi] |
| i386 | 400,1 kB | 2.997,0 kB | [dosya listesi] |
| ppc64el | 406,8 kB | 3.811,0 kB | [dosya listesi] |
| riscv64 | 407,4 kB | 2.467,0 kB | [dosya listesi] |
| s390x | 342,4 kB | 2.742,0 kB | [dosya listesi] |