Pakket: r-bioc-genomicalignments (1.42.0-2 en anderen)

Verwijzigingen voor r-bioc-genomicalignments

Debian bronnen:

Het bronpakket r-bioc-genomicalignments downloaden:

Beheerders:

Externe bronnen:

Homepage [bioconductor.org]

Vergelijkbare pakketten:

BioConductor representation and manipulation of short genomic alignments

This BioConductor package provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.

Andere aan r-bioc-genomicalignments gerelateerde pakketten

depends

recommends

suggests

enhances

dep: libc6 (>= 2.16) [x32]

GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6-udeb

dep: libc6 (>= 2.17) [arm64, ppc64el]

dep: libc6 (>= 2.27) [riscv64]

dep: libc6 (>= 2.3) [hppa]

dep: libc6 (>= 2.37) [sh4]

dep: libc6 (>= 2.4) [amd64, m68k, mips64el, ppc64, s390x, sparc64]

dep: libc6 (>= 2.40) [loong64]
dep: libc6.1 (>= 2.37) [ia64]

GNU C Bibliotheek: Gedeelde bibliotheken
Ook een virtueel pakket geboden door: libc6.1-udeb

dep: libc6.1 (>= 2.4) [alpha]
dep: r-api-3.4 [m68k]

Pakket niet beschikbaar
dep: r-api-3.5 [sparc64]

Pakket niet beschikbaar
dep: r-api-4.0 [niet m68k, sparc64]

virtueel pakket geboden door r-base-core
dep: r-api-bioc-3.16 [x32]

Pakket niet beschikbaar
dep: r-api-bioc-3.18 [hppa, ia64, sh4]

Pakket niet beschikbaar
dep: r-api-bioc-3.20 [niet hppa, ia64, m68k, sh4, sparc64, x32]

virtueel pakket geboden door r-bioc-biocgenerics
dep: r-api-bioc-3.8 [sparc64]

Pakket niet beschikbaar
dep: r-base-core (>= 3.4.3-1) [m68k]

GNU R core of statistical computation and graphics system

dep: r-base-core (>= 3.5.2-1) [sparc64]

dep: r-base-core (>= 4.2.2.20221110-1) [x32]
dep: r-bioc-biocgenerics (>= 0.15.3) [m68k, sparc64]

generic functions for Bioconductor

dep: r-bioc-biocgenerics (>= 0.37.0) [niet m68k, sparc64]
dep: r-bioc-biocparallel

BioConductor facilities for parallel evaluation
dep: r-bioc-biostrings (>= 2.37.1) [m68k]

GNU R string objects representing biological sequences

dep: r-bioc-biostrings (>= 2.47.6) [sparc64]

dep: r-bioc-biostrings (>= 2.55.7) [niet m68k, sparc64]
dep: r-bioc-genomeinfodb (>= 1.13.1)

BioConductor utilities for manipulating chromosome identifiers
dep: r-bioc-genomicranges (>= 1.29.14) [m68k]

BioConductor representation and manipulation of genomic intervals

dep: r-bioc-genomicranges (>= 1.33.4) [sparc64]

dep: r-bioc-genomicranges (>= 1.41.5) [hppa, ia64, sh4, x32]

dep: r-bioc-genomicranges (>= 1.55.3) [niet hppa, ia64, m68k, sh4, sparc64, x32]
dep: r-bioc-iranges (>= 2.11.16) [m68k]

GNU R low-level containers for storing sets of integer ranges

dep: r-bioc-iranges (>= 2.15.12) [sparc64]

dep: r-bioc-iranges (>= 2.23.9) [niet m68k, sparc64]
dep: r-bioc-rsamtools (>= 1.21.4) [m68k]

GNU R binary alignment (BAM), variant call (BCF), or tabix file import

dep: r-bioc-rsamtools (>= 1.31.2) [niet m68k]
dep: r-bioc-s4vectors (>= 0.13.13) [m68k]

BioConductor S4 implementation of vectors and lists

dep: r-bioc-s4vectors (>= 0.19.11) [sparc64]

dep: r-bioc-s4vectors (>= 0.27.12) [niet m68k, sparc64]
dep: r-bioc-summarizedexperiment (>= 1.5.3) [m68k]

BioConductor assay container

dep: r-bioc-summarizedexperiment (>= 1.9.13) [niet m68k]

rec: r-bioc-shortread (>= 1.24.0)

GNU R classes and methods for high-throughput short-read sequencing data
rec: r-cran-runit

GNU R package providing unit testing framework

sug: r-bioc-biocstyle [niet m68k, sparc64]

standard styles for vignettes and other Bioconductor documents
sug: r-bioc-bsgenome

BioConductor infrastructure for Biostrings-based genome data packages
sug: r-bioc-deseq2 [niet m68k, sparc64]

R package for RNA-Seq Differential Expression Analysis
sug: r-bioc-edger [niet sparc64]

Empirical analysis of digital gene expression data in R
sug: r-bioc-genomicfeatures

GNU R tools for making and manipulating transcript centric annotations
sug: r-bioc-rtracklayer

GNU R interface to genome browsers and their annotation tracks
sug: r-bioc-shortread [niet sparc64]

GNU R classes and methods for high-throughput short-read sequencing data
sug: r-cran-knitr [niet hppa, ia64, m68k, sh4, sparc64, x32]

GNU R package for dynamic report generation using Literate Programming
sug: r-cran-runit [niet sparc64]

GNU R package providing unit testing framework

r-bioc-genomicalignments downloaden

Pakket downloaden voor alle beschikbare platforms
Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	1.42.0-2	2.109,5 kB	3.453,0 kB	[overzicht]
amd64	1.42.0-2	2.110,4 kB	3.397,0 kB	[overzicht]
arm64	1.42.0-2	2.109,8 kB	3.453,0 kB	[overzicht]
hppa (unofficial port)	1.38.2-1	2.092,9 kB	2.965,0 kB	[overzicht]
ia64 (unofficial port)	1.38.2-1	2.095,1 kB	3.004,0 kB	[overzicht]
loong64 (unofficial port)	1.42.0-2	2.110,3 kB	3.453,0 kB	[overzicht]
m68k (unofficial port)	1.14.0-1	1.648,5 kB	2.183,0 kB	[overzicht]
mips64el	1.42.0-2	2.107,7 kB	3.459,0 kB	[overzicht]
ppc64 (unofficial port)	1.42.0-2	2.112,9 kB	3.454,0 kB	[overzicht]
ppc64el	1.42.0-2	2.111,7 kB	3.453,0 kB	[overzicht]
riscv64	1.42.0-2	2.110,4 kB	3.385,0 kB	[overzicht]
s390x	1.42.0-2	2.109,5 kB	3.397,0 kB	[overzicht]
sh4 (unofficial port)	1.38.2-1	2.091,9 kB	2.955,0 kB	[overzicht]
sparc64 (unofficial port)	1.18.1-1	2.048,6 kB	2.867,0 kB	[overzicht]
x32 (unofficial port)	1.34.0-1	2.063,0 kB	2.904,0 kB	[overzicht]