[ Källkod: r-bioc-genomicalignments ]
Paket: r-bioc-genomicalignments (1.38.2-1 och andra)
Länkar för r-bioc-genomicalignments
Debianresurser:
Hämta källkodspaketet r-bioc-genomicalignments:
- [r-bioc-genomicalignments_1.38.2-1.dsc]
- [r-bioc-genomicalignments_1.38.2.orig.tar.gz]
- [r-bioc-genomicalignments_1.38.2-1.debian.tar.xz]
Ansvariga:
Externa resurser:
- Hemsida [bioconductor.org]
Liknande paket:
BioConductor representation and manipulation of short genomic alignments
This BioConductor package provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.
Andra paket besläktade med r-bioc-genomicalignments
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- dep: libc6 (>= 2.16) [x32]
- GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
- dep: libc6 (>= 2.17) [arm64, ppc64el]
- dep: libc6 (>= 2.27) [riscv64]
- dep: libc6 (>= 2.3) [hppa]
- dep: libc6 (>= 2.37) [sh4]
- dep: libc6 (>= 2.4) [amd64, m68k, mips64el, ppc64, s390x, sparc64]
-
- dep: libc6.1 (>= 2.37) [ia64]
- GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6.1-udeb
- dep: libc6.1 (>= 2.4) [alpha]
-
- dep: r-api-3.4 [m68k]
- Paketet inte tillgängligt
-
- dep: r-api-3.5 [sparc64]
- Paketet inte tillgängligt
-
- dep: r-api-4.0 [ej m68k, sparc64]
- virtuellt paket som tillhandahålls av r-base-core
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- dep: r-api-bioc-3.16 [x32]
- Paketet inte tillgängligt
-
- dep: r-api-bioc-3.18 [ej m68k, sparc64, x32]
- virtuellt paket som tillhandahålls av r-bioc-biocgenerics
-
- dep: r-api-bioc-3.8 [sparc64]
- Paketet inte tillgängligt
-
- dep: r-base-core (>= 3.4.3-1) [m68k]
- GNU R core of statistical computation and graphics system
- dep: r-base-core (>= 3.5.2-1) [sparc64]
- dep: r-base-core (>= 4.2.2.20221110-1) [x32]
-
- dep: r-bioc-biocgenerics (>= 0.15.3) [m68k, sparc64]
- generic functions for Bioconductor
- dep: r-bioc-biocgenerics (>= 0.37.0) [ej m68k, sparc64]
-
- dep: r-bioc-biocparallel
- BioConductor facilities for parallel evaluation
-
- dep: r-bioc-biostrings (>= 2.37.1) [m68k]
- GNU R string objects representing biological sequences
- dep: r-bioc-biostrings (>= 2.47.6) [sparc64]
- dep: r-bioc-biostrings (>= 2.55.7) [ej m68k, sparc64]
-
- dep: r-bioc-genomeinfodb (>= 1.13.1)
- BioConductor utilities for manipulating chromosome identifiers
-
- dep: r-bioc-genomicranges (>= 1.29.14) [m68k]
- BioConductor representation and manipulation of genomic intervals
- dep: r-bioc-genomicranges (>= 1.33.4) [sparc64]
- dep: r-bioc-genomicranges (>= 1.41.5) [ej m68k, sparc64]
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- dep: r-bioc-iranges (>= 2.11.16) [m68k]
- GNU R low-level containers for storing sets of integer ranges
- dep: r-bioc-iranges (>= 2.15.12) [sparc64]
- dep: r-bioc-iranges (>= 2.23.9) [ej m68k, sparc64]
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- dep: r-bioc-rsamtools (>= 1.21.4) [m68k]
- GNU R binary alignment (BAM), variant call (BCF), or tabix file import
- dep: r-bioc-rsamtools (>= 1.31.2) [ej m68k]
-
- dep: r-bioc-s4vectors (>= 0.13.13) [m68k]
- BioConductor S4 implementation of vectors and lists
- dep: r-bioc-s4vectors (>= 0.19.11) [sparc64]
- dep: r-bioc-s4vectors (>= 0.27.12) [ej m68k, sparc64]
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- dep: r-bioc-summarizedexperiment (>= 1.5.3) [m68k]
- BioConductor assay container
- dep: r-bioc-summarizedexperiment (>= 1.9.13) [ej m68k]
-
- rec: r-bioc-shortread (>= 1.24.0)
- GNU R classes and methods for high-throughput short-read sequencing data
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- rec: r-cran-runit
- GNU R package providing unit testing framework
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- sug: r-bioc-biocstyle [ej m68k, sparc64]
- standard styles for vignettes and other Bioconductor documents
-
- sug: r-bioc-bsgenome
- BioConductor infrastructure for Biostrings-based genome data packages
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- sug: r-bioc-deseq2 [ej m68k, sparc64]
- R package for RNA-Seq Differential Expression Analysis
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- sug: r-bioc-edger [ej sparc64]
- Empirical analysis of digital gene expression data in R
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- sug: r-bioc-genomicfeatures
- GNU R tools for making and manipulating transcript centric annotations
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- sug: r-bioc-rtracklayer
- GNU R interface to genome browsers and their annotation tracks
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- sug: r-bioc-shortread [ej sparc64]
- GNU R classes and methods for high-throughput short-read sequencing data
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- sug: r-cran-runit [ej sparc64]
- GNU R package providing unit testing framework
Hämta r-bioc-genomicalignments
| Arkitektur | Version | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|---|
| alpha (inofficiell anpassning) | 1.38.2-1 | 2.093,2 kbyte | 3.020,0 kbyte | [filförteckning] |
| amd64 | 1.38.2-1 | 2.094,1 kbyte | 2.964,0 kbyte | [filförteckning] |
| arm64 | 1.38.2-1 | 2.093,6 kbyte | 3.020,0 kbyte | [filförteckning] |
| hppa (inofficiell anpassning) | 1.38.2-1 | 2.092,9 kbyte | 2.965,0 kbyte | [filförteckning] |
| ia64 (inofficiell anpassning) | 1.38.2-1 | 2.095,1 kbyte | 3.004,0 kbyte | [filförteckning] |
| m68k (inofficiell anpassning) | 1.14.0-1 | 1.648,5 kbyte | 2.183,0 kbyte | [filförteckning] |
| mips64el | 1.38.2-1 | 2.090,4 kbyte | 3.026,0 kbyte | [filförteckning] |
| ppc64 (inofficiell anpassning) | 1.38.2-1 | 2.096,4 kbyte | 3.021,0 kbyte | [filförteckning] |
| ppc64el | 1.38.2-1 | 2.095,6 kbyte | 3.020,0 kbyte | [filförteckning] |
| riscv64 | 1.38.2-1 | 2.094,1 kbyte | 2.952,0 kbyte | [filförteckning] |
| s390x | 1.38.2-1 | 2.093,5 kbyte | 2.964,0 kbyte | [filförteckning] |
| sh4 (inofficiell anpassning) | 1.38.2-1 | 2.091,9 kbyte | 2.955,0 kbyte | [filförteckning] |
| sparc64 (inofficiell anpassning) | 1.18.1-1 | 2.048,6 kbyte | 2.867,0 kbyte | [filförteckning] |
| x32 (inofficiell anpassning) | 1.34.0-1 | 2.063,0 kbyte | 2.904,0 kbyte | [filförteckning] |