Pakket: iva (1.0.9+ds-11)

Verwijzigingen voor iva

Debian bronnen:

Het bronpakket iva downloaden:

Beheerders:

Debian Med Packaging Team (QA-pagina, Mailarchief)
Andreas Tille (QA-pagina)
Jorge Soares (QA-pagina)
Sascha Steinbiss (QA-pagina)

Externe bronnen:

Homepage [github.com]

Vergelijkbare pakketten:

iterative virus sequence assembler

IVA is a de novo assembler designed to assemble virus genomes that have no repeat sequences, using Illumina read pairs sequenced from mixed populations at extremely high depth.

IVA's main algorithm works by iteratively extending contigs using aligned read pairs. Its input can be just read pairs, or additionally you can provide an existing set of contigs to be extended. Alternatively, it can take reads together with a reference sequence.

Tags: Biology: Nucleic Acids, Field: Biology, field::biology:bioinformatics, implemented-in::python, User Interface: Command Line, Role: role::program, works-with::biological-sequence, Works with: Bestanden

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dep: mummer

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dep: perl

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dep: python3

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dep: python3-networkx

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dep: python3-numpy

Fast array facility to the Python 3 language
dep: python3-pysam

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dep: samtools

processing sequence alignments in SAM, BAM and CRAM formats
dep: smalt

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rec: bioperl

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rec: r-base-core

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rec: trimmomatic

flexible read trimming tool for Illumina NGS data

iva downloaden

Pakket downloaden voor alle beschikbare platforms
Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	8.377,6 kB	8.765,0 kB	[overzicht]
arm64	8.377,6 kB	8.765,0 kB	[overzicht]
armel	8.377,6 kB	8.765,0 kB	[overzicht]
armhf	8.377,6 kB	8.765,0 kB	[overzicht]
i386	8.377,6 kB	8.765,0 kB	[overzicht]
mips64el	8.377,6 kB	8.765,0 kB	[overzicht]
mipsel	8.377,6 kB	8.765,0 kB	[overzicht]
ppc64el	8.377,6 kB	8.765,0 kB	[overzicht]