[ Source: r-bioc-genomicalignments ]
Paketti: r-bioc-genomicalignments (1.38.2-1 ja muut)
Links for r-bioc-genomicalignments
Debian-palvelut:
Imuroi lähdekoodipaketti r-bioc-genomicalignments:
- [r-bioc-genomicalignments_1.38.2-1.dsc]
- [r-bioc-genomicalignments_1.38.2.orig.tar.gz]
- [r-bioc-genomicalignments_1.38.2-1.debian.tar.xz]
Ylläpitäjät:
- Debian R Packages Maintainers (Laadunvalvontasivu)
- Andreas Tille (Laadunvalvontasivu)
- Charles Plessy (Laadunvalvontasivu)
External Resources:
- Kotisivu [bioconductor.org]
Samankaltaisia paketteja:
BioConductor representation and manipulation of short genomic alignments
This BioConductor package provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.
Muut pakettiin r-bioc-genomicalignments liittyvät paketit
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- dep: libc6 (>= 2.16) [x32]
- GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
- dep: libc6 (>= 2.17) [arm64, ppc64el]
- dep: libc6 (>= 2.27) [riscv64]
- dep: libc6 (>= 2.3) [hppa]
- dep: libc6 (>= 2.37) [sh4]
- dep: libc6 (>= 2.4) [amd64, m68k, mips64el, ppc64, s390x, sparc64]
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- dep: libc6.1 (>= 2.37) [ia64]
- GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6.1-udeb
- dep: libc6.1 (>= 2.4) [alpha]
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- dep: r-api-3.4 [m68k]
- Paketti ei saatavilla
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- dep: r-api-3.5 [sparc64]
- Paketti ei saatavilla
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- dep: r-api-4.0 [ei m68k, sparc64]
- näennäispaketti, jonka toteuttaa r-base-core
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- dep: r-api-bioc-3.16 [x32]
- Paketti ei saatavilla
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- dep: r-api-bioc-3.18 [ei m68k, sparc64, x32]
- näennäispaketti, jonka toteuttaa r-bioc-biocgenerics
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- dep: r-api-bioc-3.8 [sparc64]
- Paketti ei saatavilla
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- dep: r-base-core (>= 3.4.3-1) [m68k]
- GNU R core of statistical computation and graphics system
- dep: r-base-core (>= 3.5.2-1) [sparc64]
- dep: r-base-core (>= 4.2.2.20221110-1) [x32]
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- dep: r-bioc-biocgenerics (>= 0.15.3) [m68k, sparc64]
- generic functions for Bioconductor
- dep: r-bioc-biocgenerics (>= 0.37.0) [ei m68k, sparc64]
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- dep: r-bioc-biocparallel
- BioConductor facilities for parallel evaluation
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- dep: r-bioc-biostrings (>= 2.37.1) [m68k]
- GNU R string objects representing biological sequences
- dep: r-bioc-biostrings (>= 2.47.6) [sparc64]
- dep: r-bioc-biostrings (>= 2.55.7) [ei m68k, sparc64]
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- dep: r-bioc-genomeinfodb (>= 1.13.1)
- BioConductor utilities for manipulating chromosome identifiers
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- dep: r-bioc-genomicranges (>= 1.29.14) [m68k]
- BioConductor representation and manipulation of genomic intervals
- dep: r-bioc-genomicranges (>= 1.33.4) [sparc64]
- dep: r-bioc-genomicranges (>= 1.41.5) [ei m68k, sparc64]
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- dep: r-bioc-iranges (>= 2.11.16) [m68k]
- GNU R low-level containers for storing sets of integer ranges
- dep: r-bioc-iranges (>= 2.15.12) [sparc64]
- dep: r-bioc-iranges (>= 2.23.9) [ei m68k, sparc64]
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- dep: r-bioc-rsamtools (>= 1.21.4) [m68k]
- GNU R binary alignment (BAM), variant call (BCF), or tabix file import
- dep: r-bioc-rsamtools (>= 1.31.2) [ei m68k]
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- dep: r-bioc-s4vectors (>= 0.13.13) [m68k]
- BioConductor S4 implementation of vectors and lists
- dep: r-bioc-s4vectors (>= 0.19.11) [sparc64]
- dep: r-bioc-s4vectors (>= 0.27.12) [ei m68k, sparc64]
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- dep: r-bioc-summarizedexperiment (>= 1.5.3) [m68k]
- BioConductor assay container
- dep: r-bioc-summarizedexperiment (>= 1.9.13) [ei m68k]
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- rec: r-bioc-shortread (>= 1.24.0)
- GNU R classes and methods for high-throughput short-read sequencing data
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- rec: r-cran-runit
- GNU R package providing unit testing framework
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- sug: r-bioc-biocstyle [ei m68k, sparc64]
- standard styles for vignettes and other Bioconductor documents
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- sug: r-bioc-bsgenome
- BioConductor infrastructure for Biostrings-based genome data packages
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- sug: r-bioc-deseq2 [ei m68k, sparc64]
- R package for RNA-Seq Differential Expression Analysis
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- sug: r-bioc-edger [ei sparc64]
- Empirical analysis of digital gene expression data in R
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- sug: r-bioc-genomicfeatures
- GNU R tools for making and manipulating transcript centric annotations
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- sug: r-bioc-rtracklayer
- GNU R interface to genome browsers and their annotation tracks
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- sug: r-bioc-shortread [ei sparc64]
- GNU R classes and methods for high-throughput short-read sequencing data
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- sug: r-cran-runit [ei sparc64]
- GNU R package providing unit testing framework
Imuroi r-bioc-genomicalignments
| Arkkitehtuuri | Versio | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|---|
| alpha (epävirallinen siirros) | 1.38.2-1 | 2,093.2 kt | 3,020.0 kt | [tiedostoluettelo] |
| amd64 | 1.38.2-1 | 2,094.1 kt | 2,964.0 kt | [tiedostoluettelo] |
| arm64 | 1.38.2-1 | 2,093.6 kt | 3,020.0 kt | [tiedostoluettelo] |
| hppa (epävirallinen siirros) | 1.38.2-1 | 2,092.9 kt | 2,965.0 kt | [tiedostoluettelo] |
| ia64 (epävirallinen siirros) | 1.38.2-1 | 2,095.1 kt | 3,004.0 kt | [tiedostoluettelo] |
| m68k (epävirallinen siirros) | 1.14.0-1 | 1,648.5 kt | 2,183.0 kt | [tiedostoluettelo] |
| mips64el | 1.38.2-1 | 2,090.4 kt | 3,026.0 kt | [tiedostoluettelo] |
| ppc64 (epävirallinen siirros) | 1.38.2-1 | 2,096.4 kt | 3,021.0 kt | [tiedostoluettelo] |
| ppc64el | 1.38.2-1 | 2,095.6 kt | 3,020.0 kt | [tiedostoluettelo] |
| riscv64 | 1.38.2-1 | 2,094.1 kt | 2,952.0 kt | [tiedostoluettelo] |
| s390x | 1.38.2-1 | 2,093.5 kt | 2,964.0 kt | [tiedostoluettelo] |
| sh4 (epävirallinen siirros) | 1.38.2-1 | 2,091.9 kt | 2,955.0 kt | [tiedostoluettelo] |
| sparc64 (epävirallinen siirros) | 1.18.1-1 | 2,048.6 kt | 2,867.0 kt | [tiedostoluettelo] |
| x32 (epävirallinen siirros) | 1.34.0-1 | 2,063.0 kt | 2,904.0 kt | [tiedostoluettelo] |