Пакет: libvcflib-tools (1.0.12+dfsg-1 и други)

Връзки за libvcflib-tools

Ресурси за Debian:

Изтегляне на пакет-източник libvcflib.

Отговорници:

Външни препратки:

Начална страница [github.com]

Подобни пакети:

C++ library for parsing and manipulating VCF files (tools)

The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed variations between individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors.

vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both:

 * an API for parsing and operating on records of genomic variation as it can
   be described by the VCF format,
 * and a collection of command-line utilities for executing complex
   manipulations on VCF files.

This package contains several tools using the library.

Други пакети, свързани с libvcflib-tools

зависимости

препоръчани

предложени

enhances

dep: libbz2-1.0 [sparc64]

high-quality block-sorting file compressor library - runtime
dep: libc6 (>= 2.34) [m68k, ppc64, sparc64, x32]

GNU C Library: Shared libraries
също и виртуален пакет, предлаган от libc6-udeb

dep: libc6 (>= 2.35) [sh4]

dep: libc6 (>= 2.38) [amd64, arm64, mips64el, ppc64el, riscv64]

dep: libc6 (>= 2.40) [loong64]
dep: libc6.1 (>= 2.35) [ia64]

GNU C Library: Shared libraries
също и виртуален пакет, предлаган от libc6.1-udeb

dep: libc6.1 (>= 2.38) [alpha]
dep: libdisorder0 (>= 0.0.2)

library for entropy measurement of byte streams
dep: libfastahack0 (>= 0.0+git20160702.bbc645f) [amd64, arm64, ia64, mips64el, ppc64el, sparc64]

library for indexing and sequence extraction from FASTA files (lib)

dep: libfastahack0 (>= 1.0.0+dfsg) [не amd64, arm64, ia64, mips64el, ppc64el, sparc64]
dep: libgcc-s1 (>= 3.0) [x32]

GCC support library

dep: libgcc-s1 (>= 3.3.1) [не ia64, m68k, ppc64, sh4, sparc64, x32]

dep: libgcc-s1 (>= 3.4) [sh4, sparc64]

dep: libgcc-s1 (>= 3.4.4) [ppc64]

dep: libgcc-s1 (>= 4.2) [ia64]
dep: libgcc-s2 (>= 4.2.1) [m68k]

GCC support library
dep: libgomp1 (>= 4.2.1) [sparc64]

GCC OpenMP (GOMP) support library
dep: libhts3 (>= 1.10) [sparc64]

C library for high-throughput sequencing data formats
dep: liblzma5 (>= 5.1.1alpha+20110809) [sparc64]

XZ-format compression library
dep: libsmithwaterman0 (>= 0.0+git20160702.2610e25)

determine similar regions between two strings or genomic sequences (lib)
dep: libssw0 (>= 1.1) [sparc64]

fast SIMD parallelized implementation of the Smith-Waterman algorithm
dep: libstdc++6 (>= 11) [ia64, m68k, ppc64, sh4, sparc64, x32]

GNU Standard C++ Library v3

dep: libstdc++6 (>= 13.1) [не ia64, m68k, ppc64, sh4, sparc64, x32]
dep: libtabixpp0 (>= 1.0.0) [ia64, m68k, ppc64, sh4, sparc64, x32]

C++ wrapper to tabix indexer
dep: libtabixpp0t64 (>= 1.0.0) [не ia64, m68k, ppc64, sh4, sparc64, x32]

C++ wrapper to tabix indexer
dep: libunwind8 [ia64]

library to determine the call-chain of a program - runtime
dep: libvcflib1 (>= 1.0.3+dfsg) [ia64, m68k, ppc64, sh4, sparc64, x32]

C++ library for parsing and manipulating VCF files
dep: libvcflib2 (>= 1.0.12+dfsg) [не ia64, m68k, ppc64, sh4, sparc64, x32]

C++ library for parsing and manipulating VCF files
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: r-base-core

GNU R core of statistical computation and graphics system
dep: r-cran-ggplot2

implementation of the Grammar of Graphics
dep: r-cran-gridbase

GNU R Integration of base and grid graphics
dep: r-cran-plyr

tools for splitting, applying and combining data
dep: zlib1g (>= 1:1.1.4) [sparc64]

compression library - runtime

sug: r-cran-pracma

practical numerical math functions for GNU R

Изтегляне на libvcflib-tools

Изтегляне за всички налични архитектури
Архитектура	Версия	Големина на пакета	Големина след инсталиране	Файлове
alpha (неофициална архитектура)	1.0.12+dfsg-1	567,7 кБ	6 144,0 кБ	[списък на файловете]
amd64	1.0.12+dfsg-1	593,9 кБ	3 475,0 кБ	[списък на файловете]
arm64	1.0.12+dfsg-1	535,1 кБ	5 999,0 кБ	[списък на файловете]
ia64 (неофициална архитектура)	1.0.3+dfsg-2	853,2 кБ	8 189,0 кБ	[списък на файловете]
loong64 (неофициална архитектура)	1.0.12+dfsg-1	550,1 кБ	5 999,0 кБ	[списък на файловете]
m68k (неофициална архитектура)	1.0.3+dfsg-2	711,2 кБ	4 531,0 кБ	[списък на файловете]
mips64el	1.0.12+dfsg-1	562,4 кБ	6 184,0 кБ	[списък на файловете]
ppc64 (неофициална архитектура)	1.0.3+dfsg-2	707,1 кБ	8 228,0 кБ	[списък на файловете]
ppc64el	1.0.12+dfsg-1	582,8 кБ	6 127,0 кБ	[списък на файловете]
riscv64	1.0.12+dfsg-1	565,0 кБ	2 615,0 кБ	[списък на файловете]
sh4 (неофициална архитектура)	1.0.3+dfsg-2	808,7 кБ	6 691,0 кБ	[списък на файловете]
sparc64 (неофициална архитектура)	1.0.3+dfsg-2	816,8 кБ	91 827,0 кБ	[списък на файловете]
x32 (неофициална архитектура)	1.0.3+dfsg-2	729,6 кБ	4 483,0 кБ	[списък на файловете]