Paket: discosnp (1:2.6.2-3 ve diğerleri) [debports]

discosnp için bağlantılar

Debian Kaynakları:

Hata Raporları

Kaynak Paketini İndir:

Bulunamadı

Geliştiriciler:

Dış Kaynaklar:

Ana Sayfa [colibread.inria.fr]

Benzer paketler:

discovering Single Nucleotide Polymorphism from raw set(s) of reads

Software discoSnp is designed for discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation Sequencers (NGS).

Note that number of input read sets is not constrained, it can be one, two, or more. Note also that no other data as reference genome or annotations are needed.

The software is composed by two modules. First module, kissnp2, detects SNPs from read sets. A second module, kissreads, enhance the kissnp2 results by computing per read set and for each found SNP:

 1) its mean read coverage
 2) the (phred) quality of reads generating the polymorphism.

This program is superseded by DiscoSnp++.

discosnp ile İlgili Diğer Paketler

bağımlılıklar

tavsiye edilen

önerilen

enhances

dep: gatb-core

Genome Analysis Toolbox with de-Bruijn graph
dep: libc6.1 (>= 2.34)

GNU C Library: Shared libraries
ayrıca şunun tarafından sağlanan bir sanal paket libc6.1-udeb
dep: libgatbcore3 (>= 1.4.2+dfsg)

dynamic library of the Genome Analysis Toolbox
dep: libgcc-s1 (>= 3.0)

GCC support library
dep: libhdf5-103-1t64

HDF5 C runtime files - serial version
dep: libstdc++6 (>= 13.1)

GNU Standard C++ Library v3
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: zlib1g (>= 1:1.2.6)

compression library - runtime

discosnp indir

Tüm mevcut mimariler için indir
Mimari	Sürüm	Paket Boyutu	Kurulu Boyut	Dosyalar
alpha (resmi olmayan port)	1:2.6.2-3+b1	1.407,7 kB	3.063,0 kB	[dosya listesi]