Paket: spades (3.15.5+dfsg-2)

spades için bağlantılar

Debian Kaynakları:

spades Kaynak Paketini İndir:

Geliştiriciler:

Dış Kaynaklar:

Ana Sayfa [cab.spbu.ru]

Benzer paketler:

genome assembler for single-cell and isolates data sets

The SPAdes – St. Petersburg genome assembler is intended for both standard isolates and single-cell MDA bacteria assemblies. It works with Illumina or IonTorrent reads and is capable of providing hybrid assemblies using PacBio and Sanger reads. You can also provide additional contigs that will be used as long reads.

This package provides the following additional pipelines:

 * metaSPAdes – a pipeline for metagenomic data sets
 * plasmidSPAdes – a pipeline for extracting and assembling plasmids
   from WGS data sets
 * metaplasmidSPAdes – a pipeline for extracting and assembling
   plasmids from metagenomic data sets
 * rnaSPAdes – a de novo transcriptome assembler from RNA-Seq data
 * truSPAdes – a module for TruSeq barcode assembly
 * biosyntheticSPAdes – a module for biosynthetic gene cluster
   assembly with paired-end reads

SPAdes provides several stand-alone binaries with relatively simple command-line interface: k-mer counting (spades-kmercounter), assembly graph construction (spades-gbuilder) and long read to graph aligner (spades-gmapper).

Etiketler: Biyoloji: Nükleik Asitler, Alan: Biyoloji, field::biology:bioinformatics, implemented-in::c++, Geliştirildiği dil: Python, Kullanıcı Arayüzü: interface::commandline, role::program, Kapsam: Yardımcı Araç, Şununla çalışır: works-with::biological-sequence, works-with::file

spades ile İlgili Diğer Paketler

bağımlılıklar

tavsiye edilen

önerilen

enhances

dep: bamtools

toolkit for manipulating BAM (genome alignment) files
dep: bwa

Burrows-Wheeler Aligner
dep: libc6 (>= 2.34)

GNU C Library: Shared libraries
ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb
dep: libgcc-s1 (>= 4.0)

GCC support library
dep: libgomp1 (>= 6)

GCC OpenMP (GOMP) support library
dep: libnlopt0 (>= 2.6.1)

nonlinear optimization library
dep: libssw0 (>= 1.1)

fast SIMD parallelized implementation of the Smith-Waterman algorithm
dep: libstdc++6 (>= 12)

GNU Standard C++ Library v3
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-distutils

distutils package for Python 3.x
dep: python3-joblib

tools to provide lightweight pipelining in Python
dep: python3-yaml

YAML parser and emitter for Python3
dep: samtools

processing sequence alignments in SAM, BAM and CRAM formats
dep: zlib1g (>= 1:1.2.3.3)

compression library - runtime

spades indir

Tüm mevcut mimariler için indir
Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	8.460,1 kB	36.984,0 kB	[dosya listesi]