Paket: r-bioc-tfbstools (1.36.0+dfsg-2)

r-bioc-tfbstools için bağlantılar

Debian Kaynakları:

r-bioc-tfbstools Kaynak Paketini İndir:

Geliştiriciler:

Dış Kaynaklar:

Ana Sayfa [bioconductor.org]

Benzer paketler:

GNU R Transcription Factor Binding Site (TFBS) Analysis

TFBSTools is a package for the analysis and manipulation of transcription factor binding sites. It includes matrices conversion between Position Frequency Matirx (PFM), Position Weight Matirx (PWM) and Information Content Matrix (ICM). It can also scan putative TFBS from sequence/alignment, query JASPAR database and provides a wrapper of de novo motif discovery software.

r-bioc-tfbstools ile İlgili Diğer Paketler

bağımlılıklar

tavsiye edilen

önerilen

enhances

dep: libc6 (>= 2.17) [arm64, ppc64el]

GNU C Library: Shared libraries
ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

dep: libc6 (>= 2.4) [arm64, ppc64el değil]
dep: r-api-4.0

sanal paketi sağlayan r-base-core
dep: r-api-bioc-3.16

sanal paketi sağlayan r-bioc-biocgenerics
dep: r-base-core (>= 4.2.2.20221110-1)

GNU R core of statistical computation and graphics system
dep: r-bioc-biobase (>= 2.28)

base functions for Bioconductor
dep: r-bioc-biocgenerics (>= 0.14.0)

generic functions for Bioconductor
dep: r-bioc-biocparallel (>= 1.2.21)

BioConductor facilities for parallel evaluation
dep: r-bioc-biostrings (>= 2.36.4)

GNU R string objects representing biological sequences
dep: r-bioc-bsgenome (>= 1.36.3)

BioConductor infrastructure for Biostrings-based genome data packages
dep: r-bioc-cner (>= 1.4.0)

CNE Detection and Visualization
dep: r-bioc-dirichletmultinomial (>= 1.10.0)

Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data
dep: r-bioc-genomeinfodb (>= 1.6.1)

BioConductor utilities for manipulating chromosome identifiers
dep: r-bioc-genomicranges (>= 1.20.6)

BioConductor representation and manipulation of genomic intervals
dep: r-bioc-iranges (>= 2.2.7)

GNU R low-level containers for storing sets of integer ranges
dep: r-bioc-rtracklayer (>= 1.28.10)

GNU R interface to genome browsers and their annotation tracks
dep: r-bioc-s4vectors (>= 0.9.25)

BioConductor S4 implementation of vectors and lists
dep: r-bioc-seqlogo (>= 1.34.0)

GNU R sequence logos for DNA sequence alignments
dep: r-bioc-xvector (>= 0.8.0)

BioConductor representation and manpulation of external sequences
dep: r-cran-catools (>= 1.17.1)

GNU R package providing various utility functions
dep: r-cran-dbi (>= 0.6)

GNU R package providing a generic database interface
dep: r-cran-gtools (>= 3.5.0)

GNU R package with R programming tools by Greg Warnes et al
dep: r-cran-rsqlite (>= 1.0.0)

Database Interface R driver for SQLite
dep: r-cran-tfmpvalue (>= 0.0.5)

GNU R P-Value Computation for Position Weight Matrices
dep: r-cran-xml (>= 3.98-1.3)

GNU R package for XML parsing and generation

sug: r-bioc-biocstyle (>= 1.7.7)

standard styles for vignettes and other Bioconductor documents
sug: r-cran-knitr (>= 1.11)

GNU R package for dynamic report generation using Literate Programming
sug: r-cran-rmarkdown

convert R markdown documents into a variety of formats
sug: r-cran-testthat

GNU R testsuite

r-bioc-tfbstools indir

Tüm mevcut mimariler için indir
Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	988,0 kB	1.853,0 kB	[dosya listesi]
arm64	987,3 kB	1.905,0 kB	[dosya listesi]
armel	988,9 kB	1.904,0 kB	[dosya listesi]
armhf	987,4 kB	1.904,0 kB	[dosya listesi]
i386	931,2 kB	1.794,0 kB	[dosya listesi]
mips64el	987,9 kB	1.905,0 kB	[dosya listesi]
mipsel	987,7 kB	1.904,0 kB	[dosya listesi]
ppc64el	988,5 kB	1.905,0 kB	[dosya listesi]
s390x	987,7 kB	1.849,0 kB	[dosya listesi]