Paket: samtools (1.22.1-1)

Länkar för samtools

Debianresurser:

Hämta källkodspaketet samtools:

Ansvariga:

Debian Med Packaging Team (QA-sida, E-postarkiv)
Charles Plessy (QA-sida)
Andreas Tille (QA-sida)
Étienne Mollier (QA-sida)

Externa resurser:

Hemsida [www.htslib.org]

Liknande paket:

processing sequence alignments in SAM, BAM and CRAM formats

Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) and CRAM formats, does sorting, merging and indexing, and allows one to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM or CRAM (not SAM) file on a remote FTP or HTTP server.

Märken: Field: Biologi, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Networking: Client, Network Protocol: FTP, protocol::http, role::program, Scope: Utility, Interface Toolkit: Ncurses TUI, Purpose: use::analysing, use::calculating, Filtering, Works with: Biological Sequence

Andra paket besläktade med samtools

beror

rekommenderar

föreslår

enhances

dep: libc6 (>= 2.34)

GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
dep: libhts3t64 (>= 1.22.1+ds-1)

C library for high-throughput sequencing data formats
dep: libncurses6 (>= 6)

shared libraries for terminal handling
dep: libtinfo6 (>= 6)

shared low-level terminfo library for terminal handling
dep: zlib1g (>= 1:1.1.4) [ej armhf, i386]

Kompressionsbibliotek - körtidspaket

dep: zlib1g (>= 1:1.2.3.3) [armhf, i386]

sug: cwltool

Common Workflow Language reference implementation

Hämta samtools

Hämtningar för alla tillgängliga arkitekturer
Arkitektur	Paketstorlek	Installerad storlek	Filer
amd64	680,3 kbyte	1.495,0 kbyte	[filförteckning]
arm64	650,1 kbyte	1.755,0 kbyte	[filförteckning]
armhf	645,0 kbyte	1.556,0 kbyte	[filförteckning]
i386	713,4 kbyte	1.632,0 kbyte	[filförteckning]
ppc64el	706,9 kbyte	2.011,0 kbyte	[filförteckning]
riscv64	685,7 kbyte	1.339,0 kbyte	[filförteckning]
s390x	683,6 kbyte	1.555,0 kbyte	[filförteckning]