[ Källkod: murasaki ]
Paket: murasaki-mpi (1.68.6-13 och andra)
Länkar för murasaki-mpi
Debianresurser:
Hämta källkodspaketet murasaki:
- [murasaki_1.68.6-13.dsc]
- [murasaki_1.68.6.orig-debian-tests-data.tar.gz]
- [murasaki_1.68.6.orig.tar.gz]
- [murasaki_1.68.6-13.debian.tar.xz]
Ansvariga:
Externa resurser:
- Hemsida [murasaki.dna.bio.keio.ac.jp]
Liknande paket:
homology detection tool across multiple large genomes (MPI-version)
Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering.
Murasaki is an anchor alignment software, which is
* exteremely fast (17 CPU hours for whole Human x Mouse genome (with 40 nodes: 52 wall minutes)) * scalable (Arbitrarily parallelizable across multiple nodes using MPI. Even a single node with 16GB of ram can handle over 1Gbp of sequence.) * unlimited pattern length * repeat tolerant * intelligent noise reduction
This package provides the MPI-enabled binary for murasaki. While this will speed up operation on multi-processor machines it will slow down on a single processor.
Andra paket besläktade med murasaki-mpi
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- dep: libboost-filesystem1.74.0 (>= 1.74.0)
- filesystem operations (portable paths, iteration over directories, etc) in C++
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- dep: libboost-iostreams1.74.0 (>= 1.74.0)
- Boost.Iostreams Library
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- dep: libboost-regex1.74.0-icu72
- virtuellt paket som tillhandahålls av libboost-regex1.74.0
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- dep: libc6 (>= 2.34)
- GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [ej armel, armhf, i386, mipsel]
- GCC stödbibliotek
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [i386, mipsel]
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- dep: libopenmpi3 (>= 4.1.4)
- high performance message passing library -- shared library
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- dep: libstdc++6 (>= 11)
- GNU standardbibliotek v3 för C++
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- dep: murasaki-common
- homology detection tool across multiple large genomes (common files)
Hämta murasaki-mpi
| Arkitektur | Version | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|---|
| amd64 | 1.68.6-13+b3 | 626,1 kbyte | 4.010,0 kbyte | [filförteckning] |
| arm64 | 1.68.6-13+b3 | 548,8 kbyte | 4.114,0 kbyte | [filförteckning] |
| armel | 1.68.6-13+b3 | 409,5 kbyte | 2.948,0 kbyte | [filförteckning] |
| armhf | 1.68.6-13+b3 | 418,0 kbyte | 2.116,0 kbyte | [filförteckning] |
| i386 | 1.68.6-13+b3 | 636,0 kbyte | 3.740,0 kbyte | [filförteckning] |
| mips64el | 1.68.6-13+b3 | 592,0 kbyte | 5.394,0 kbyte | [filförteckning] |
| mipsel | 1.68.6-13+b3 | 580,4 kbyte | 4.750,0 kbyte | [filförteckning] |
| ppc64el | 1.68.6-13+b2 | 626,2 kbyte | 5.202,0 kbyte | [filförteckning] |
| s390x | 1.68.6-13+b2 | 557,7 kbyte | 4.266,0 kbyte | [filförteckning] |