Package: murasaki-mpi (1.68.6-15 and others)

Links for murasaki-mpi

Debian Resources:

Download Source Package murasaki:

Maintainers:

External Resources:

Homepage [murasaki.dna.bio.keio.ac.jp]

Similar packages:

homology detection tool across multiple large genomes (MPI-version)

Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering.

Murasaki is an anchor alignment software, which is

 * exteremely fast (17 CPU hours for whole Human x Mouse genome (with
   40 nodes: 52 wall minutes))
 * scalable (Arbitrarily parallelizable across multiple nodes using MPI.
   Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
 * unlimited pattern length
 * repeat tolerant
 * intelligent noise reduction

This package provides the MPI-enabled binary for murasaki. While this will speed up operation on multi-processor machines it will slow down on a single processor.

Other Packages Related to murasaki-mpi

depends

recommends

suggests

enhances

dep: libboost-filesystem1.83.0 (>= 1.83.0)

filesystem operations (portable paths, iteration over directories, etc) in C++
dep: libboost-iostreams1.83.0 (>= 1.83.0)

Boost.Iostreams Library
dep: libc6 (>= 2.38) [not alpha, ia64, loong64, sh4]

GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb

dep: libc6 (>= 2.41) [loong64, sh4]
dep: libc6.1 (>= 2.37) [ia64]

GNU C Library: Shared libraries
also a virtual package provided by libc6.1-udeb

dep: libc6.1 (>= 2.38) [alpha]
dep: libgcc-s1 (>= 3.0) [amd64, arm64, i386, loong64, mips64el, ppc64, ppc64el, s390x, x32]

GCC support library

dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4, sparc64]

dep: libgcc-s1 (>= 3.5) [armel, armhf]

dep: libgcc-s1 (>= 4.2) [ia64]
dep: libgcc-s2 (>= 4.2.1) [m68k]

GCC support library
dep: libgcc-s4 (>= 4.1.1) [hppa]

GCC support library
dep: libmpich12 [armel, armhf, hppa, i386, m68k, sh4]

Shared libraries for MPICH

dep: libmpich12 (>= 4.2.0) [x32]
dep: libopenmpi3t64 (>= 4.1.6) [ia64]

high performance message passing library -- shared library
dep: libopenmpi40 (>= 5.0.8) [not armel, armhf, hppa, i386, ia64, m68k, sh4, x32]

high performance message passing library -- shared library
dep: libstdc++6 (>= 13.1) [ia64]

GNU Standard C++ Library v3

dep: libstdc++6 (>= 14) [not ia64]
dep: libunwind8 [ia64]

library to determine the call-chain of a program - runtime
dep: murasaki-common

homology detection tool across multiple large genomes (common files)

Download murasaki-mpi

Download for all available architectures
Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.68.6-15	637.8 kB	5,113.0 kB	[list of files]
amd64	1.68.6-15	679.2 kB	4,555.0 kB	[list of files]
arm64	1.68.6-15	584.3 kB	4,455.0 kB	[list of files]
armel	1.68.6-15	495.7 kB	3,918.0 kB	[list of files]
armhf	1.68.6-15	506.8 kB	2,766.0 kB	[list of files]
hppa (unofficial port)	1.68.6-15	629.0 kB	4,092.0 kB	[list of files]
i386	1.68.6-15	684.2 kB	4,247.0 kB	[list of files]
ia64 (unofficial port)	1.68.6-13+b5	766.7 kB	9,658.0 kB	[list of files]
loong64 (unofficial port)	1.68.6-15	617.8 kB	4,837.0 kB	[list of files]
m68k (unofficial port)	1.68.6-15	655.6 kB	4,726.0 kB	[list of files]
mips64el	1.68.6-15	628.0 kB	6,005.0 kB	[list of files]
ppc64 (unofficial port)	1.68.6-15	647.7 kB	5,991.0 kB	[list of files]
ppc64el	1.68.6-15	656.2 kB	5,735.0 kB	[list of files]
riscv64	1.68.6-15	630.0 kB	3,259.0 kB	[list of files]
s390x	1.68.6-15	649.8 kB	4,926.0 kB	[list of files]
sh4 (unofficial port)	1.68.6-15	636.4 kB	4,174.0 kB	[list of files]
sparc64 (unofficial port)	1.68.6-15	541.4 kB	13,464.0 kB	[list of files]
x32 (unofficial port)	1.68.6-15	652.3 kB	4,106.0 kB	[list of files]