[ ソース: bifrost ]
パッケージ: libbifrost0 (1.3.1-1 など)
library for parallel construction, indexing and querying of de Bruijn graphs
Libbifrost is the shared library for the command-line tool bifrost for sequencing that features a broad range of functions, such as indexing, editing, and querying the graph, and includes a graph coloring method that maps each k-mer of the graph to the genomes it occurs in.
* Build, index, color and query the compacted de Bruijn graph * No need to build the uncompacted de Bruijn graph * Reads or assembled genomes as input * Output graph in GFA (can be visualized with Bandage), FASTA or binary * Graph cleaning: short tip clipping, etc. * Multi-threaded * No parameters to estimate with other tools * Exact or approximate k-mer search of queries
その他の libbifrost0 関連パッケージ
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- dep: libc6 (>= 2.34) [arm64 以外]
- GNU C ライブラリ: 共有ライブラリ
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
- dep: libc6 (>= 2.38) [arm64]
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- dep: libgcc-s1 (>= 3.0) [amd64, riscv64 以外]
- GCC 共有ライブラリ
- dep: libgcc-s1 (>= 3.4) [amd64, riscv64]
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- dep: libstdc++6 (>= 13.1) [arm64 以外]
- GNU 標準 C++ ライブラリ v3
- dep: libstdc++6 (>= 14) [arm64]
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- dep: zlib1g (>= 1:1.1.4)
- 圧縮ライブラリ - ランタイム