Paketti: python3-dna-jellyfish (2.3.1-3 ja muut)

Links for python3-dna-jellyfish

Debian-palvelut:

Imuroi lähdekoodipaketti jellyfish:

Ylläpitäjät:

External Resources:

Kotisivu [www.genome.umd.edu]

Samankaltaisia paketteja:

count k-mers in DNA sequences (Python bindings of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the Python bindings of jellyfish.

Muut pakettiin python3-dna-jellyfish liittyvät paketit

depends

recommends

suggests

enhances

dep: libc6 (>= 2.34) [ei ia64]

GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
dep: libc6.1 (>= 2.31) [ia64]

GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6.1-udeb
dep: libgcc-s1 (>= 3.0) [ei hppa, ia64, riscv64]

GCC:n apukirjasto

dep: libgcc-s1 (>= 3.4) [riscv64]

dep: libgcc-s1 (>= 4.2) [ia64]
dep: libgcc-s4 (>= 4.1.1) [hppa]

GCC:n apukirjasto
dep: libjellyfish-2.0-2 (>= 2.3.0) [ia64]

count k-mers in DNA sequences (dynamic library of jellyfish)

dep: libjellyfish-2.0-2 (>= 2.3.1) [ei ia64]
dep: libstdc++6 (>= 13.1) [ei ia64]

GNU standardi C++ -kirjasto, versio 3

dep: libstdc++6 (>= 9) [ia64]
dep: libunwind8 [ia64]

library to determine the call-chain of a program - runtime
dep: python3

interactive high-level object-oriented language (default python3 version)

dep: python3 (<< 3.10) [ia64]

dep: python3 (<< 3.13) [ei ia64]

dep: python3 (>= 3.11~) [ei ia64]

dep: python3 (>= 3.9~) [ia64]

Imuroi python3-dna-jellyfish

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
amd64	2.3.1-3+b3	65.1 kt	326.0 kt	[tiedostoluettelo]
arm64	2.3.1-3+b3	62.6 kt	438.0 kt	[tiedostoluettelo]
hppa (epävirallinen siirros)	2.3.1-2+b1	74.2 kt	384.0 kt	[tiedostoluettelo]
ia64 (epävirallinen siirros)	2.3.0-12	67.0 kt	280.0 kt	[tiedostoluettelo]
mips64el	2.3.1-3+b4	60.0 kt	452.0 kt	[tiedostoluettelo]
ppc64el	2.3.1-3+b4	66.7 kt	438.0 kt	[tiedostoluettelo]
riscv64	2.3.1-3+b4	68.2 kt	286.0 kt	[tiedostoluettelo]