[ Source: nanopolish ]
Paketti: nanopolish (0.14.0-1)
Links for nanopolish
Debian-palvelut:
Imuroi lähdekoodipaketti nanopolish:
Ylläpitäjät:
External Resources:
- Kotisivu [github.com]
Samankaltaisia paketteja:
consensus caller for nanopore sequencing data
Nanopolish uses a signal-level hidden Markov model for consensus calling of nanopore genome sequencing data. It can perform signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more.
Muut pakettiin nanopolish liittyvät paketit
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- dep: libc6 (>= 2.29)
- GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
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- dep: libgcc-s1 (>= 3.3.1) [amd64, arm64, i386, mips64el]
- GCC:n apukirjasto
- dep: libgcc-s1 (>= 3.4.4) [ppc64el]
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [mipsel]
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- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
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- dep: libhdf5-103-1
- HDF5 C runtime files - serial version
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- dep: libhts3 (>= 1.10)
- C library for high-throughput sequencing data formats
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- dep: libslow5-0 (>= 0.5.1+dfsg)
- library for reading & writing SLOW5 files
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- dep: libstdc++6 (>= 11)
- GNU standardi C++ -kirjasto, versio 3
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- dep: libstreamvbyte0 (>= 0.4.1)
- fast integer compression in C using the StreamVByte codec
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- dep: perl
- Larry Wallin kieli tekstitiedostojen analysointia ja raportointia varten
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: zlib1g (>= 1:1.1.4)
- pakkauskirjaston ajonaikaistiedostot
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- rec: python3-biopython
- Python3 library for bioinformatics
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- rec: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
Imuroi nanopolish
| Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|
| amd64 | 2,150.9 kt | 9,355.0 kt | [tiedostoluettelo] |
| arm64 | 2,084.4 kt | 9,218.0 kt | [tiedostoluettelo] |
| armel | 2,082.3 kt | 9,345.0 kt | [tiedostoluettelo] |
| armhf | 2,096.9 kt | 8,961.0 kt | [tiedostoluettelo] |
| i386 | 2,167.9 kt | 9,441.0 kt | [tiedostoluettelo] |
| mips64el | 2,110.5 kt | 9,655.0 kt | [tiedostoluettelo] |
| mipsel | 2,128.5 kt | 9,647.0 kt | [tiedostoluettelo] |
| ppc64el | 2,159.1 kt | 9,667.0 kt | [tiedostoluettelo] |