[ Source: tiddit ]
Package: tiddit (3.6.1+dfsg-1 and others)
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Strukturel variant-kald
TIDDIT er et værktøj brugt til at identificere kromosomale omlægninger ved hjælp af Mate Pair- eller Paired End-sekventeringsdata. TIDDIT identificerer intra- og inter-kromosomale translokationer, sletninger, tandem-duplikationer og inversioner ved hjælp af supplerende justeringer samt uoverensstemmende par.
TIDDIT har to analysemoduler. Sv-tilstanden, som bruges til at søge efter strukturelle varianter. Og cov-tilstand, der analyserer læsedybden af en bam-fil og opretter en dækningsrapport.
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Download tiddit
| Architecture | Version | Package Size | Installed Size | Files |
|---|---|---|---|---|
| alpha (unofficial port) | 3.6.1+dfsg-1+b1 | 443.9 kB | 2,794.0 kB | [list of files] |
| amd64 | 3.6.1+dfsg-1+b1 | 515.0 kB | 2,358.0 kB | [list of files] |
| arm64 | 3.6.1+dfsg-1+b1 | 404.1 kB | 2,392.0 kB | [list of files] |
| armel | 3.6.1+dfsg-1+b1 | 421.6 kB | 2,016.0 kB | [list of files] |
| armhf | 3.6.1+dfsg-1+b1 | 435.4 kB | 1,408.0 kB | [list of files] |
| hppa (unofficial port) | 2.12.2+dfsg-1+b1 | 228.8 kB | 906.0 kB | [list of files] |
| i386 | 3.6.1+dfsg-1+b1 | 474.3 kB | 2,242.0 kB | [list of files] |
| ia64 (unofficial port) | 3.6.1+dfsg-1+b1 | 478.9 kB | 3,466.0 kB | [list of files] |
| m68k (unofficial port) | 3.6.1+dfsg-1+b1 | 399.7 kB | 1,940.0 kB | [list of files] |
| mips64el | 3.6.1+dfsg-1+b1 | 372.2 kB | 2,683.0 kB | [list of files] |
| ppc64 (unofficial port) | 2.12.2+dfsg-1+b1 | 225.3 kB | 1,232.0 kB | [list of files] |
| ppc64el | 3.6.1+dfsg-1+b1 | 438.6 kB | 2,776.0 kB | [list of files] |
| riscv64 | 3.6.1+dfsg-1+b1 | 460.2 kB | 1,684.0 kB | [list of files] |
| sh4 (unofficial port) | 3.6.1+dfsg-1+b1 | 617.4 kB | 2,164.0 kB | [list of files] |
| x32 (unofficial port) | 3.6.1+dfsg-1 | 278.2 kB | 1,054.0 kB | [list of files] |