Package: libfreecontact-perl (0.08-11 and others)
Links for libfreecontact-perl
Debian Resources:
Download Source Package libfreecontact-perl:
- [libfreecontact-perl_0.08-11.dsc]
- [libfreecontact-perl_0.08.orig.tar.gz]
- [libfreecontact-perl_0.08-11.debian.tar.xz]
Maintainers:
External Resources:
- Homepage [rostlab.org]
Similar packages:
Hurtig protein-kontaktprædiktor - binding for Perl
FreeContact er en protein-kontaktrestprædiktor optimeret til hastighed. Dens indgang er en flersekvensopstilling. FreeContact kan fungere som en accelereret erstatning for de offentliggjorte kontaktprædiktorer EVfold-mfDCA af DS. Marks (2011) og PSICOV af D. Jones (2011).
FreeContact accelereres af en kombination af vektorinstruktioner, flere tråde og hurtigere gennemførelse af centrale dele. Afhængig af opstillingen er 8-fold eller højere hastighedsforøgelser mulige.
En tilstrækkelig stor tilpasning er påkrævet for meningsfulde resultater. Som minimum bør en opstilling med et effektivt (efter-vægtning) sekvensantal større end længden af søgesekvensen anvendes. Opstillinger med titusinder af (effektive) sekvenser betragtes som gode inddata.
Jackhmmer(1) fra hmmer-pakken eller hhblits(1) fra hhsuite kan anvendes til at oprette opstillingerne, f.eks.
Denne pakke indeholder Perlbindingen.
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Download libfreecontact-perl
| Architecture | Version | Package Size | Installed Size | Files |
|---|---|---|---|---|
| alpha (unofficial port) | 0.08-9+b1 | 62.4 kB | 226.0 kB | [list of files] |
| amd64 | 0.08-11 | 62.0 kB | 207.0 kB | [list of files] |
| arm64 | 0.08-11 | 60.1 kB | 223.0 kB | [list of files] |
| hppa (unofficial port) | 0.08-9+b6 | 62.9 kB | 213.0 kB | [list of files] |
| ia64 (unofficial port) | 0.08-9+b4 | 64.7 kB | 258.0 kB | [list of files] |
| loong64 (unofficial port) | 0.08-11 | 61.0 kB | 222.0 kB | [list of files] |
| m68k (unofficial port) | 0.08-9+b5 | 62.1 kB | 216.0 kB | [list of files] |
| mips64el | 0.08-11 | 59.4 kB | 224.0 kB | [list of files] |
| ppc64 (unofficial port) | 0.08-11 | 61.5 kB | 223.0 kB | [list of files] |
| ppc64el | 0.08-11 | 61.4 kB | 223.0 kB | [list of files] |
| riscv64 | 0.08-11 | 60.8 kB | 195.0 kB | [list of files] |
| s390x | 0.08-11 | 61.9 kB | 207.0 kB | [list of files] |
| sh4 (unofficial port) | 0.08-9+b6 | 64.3 kB | 224.0 kB | [list of files] |
| sparc64 (unofficial port) | 0.08-11 | 59.6 kB | 1,184.0 kB | [list of files] |
| x32 (unofficial port) | 0.08-9+b5 | 62.6 kB | 208.0 kB | [list of files] |