Пакет: atac (0~20150903+r2013-8 и други)

Връзки за atac

Ресурси за Debian:

Изтегляне на пакет-източник kmer.

Отговорници:

Външни препратки:

Начална страница [kmer.sourceforge.net]

Подобни пакети:

genome assembly-to-assembly comparison

atac computes a one-to-one pairwise alignment of large DNA sequences. It first finds the unique k-mers in each sequence, chains them to larger blocks, and fills in spaces between blocks. It was written primarily to transfer annotations between different assemblies of the human genome.

The output is a set of ungapped 'matches', and a set of gapped 'runs' formed from the matches. Each match or run associates one sequence with the other sequence. The association is 'unique', in that there is no other (sizeable) associations for either sequence. Thus, large repeats and duplications are not present in the output - they appear as unmapped regions.

Though the output is always pairwise, atac can cache intermediate results to speed a comparisons of multiple sequences.

This package is part of the Kmer suite.

Други пакети, свързани с atac

зависимости

препоръчани

предложени

enhances

dep: gnuplot

Command-line driven interactive plotting program.
също и виртуален пакет, предлаган от gnuplot-nox, gnuplot-qt, gnuplot-x11
dep: leaff

biological sequence library utilities and applications
dep: libc6 (>= 2.7)

GNU C Library: Shared libraries
също и виртуален пакет, предлаган от libc6-udeb
dep: libfile-which-perl

Perl module for searching paths for executable programs
dep: libgcc-s1 (>= 3.5)

GCC support library
dep: libstdc++6 (>= 5.2)

GNU Standard C++ Library v3
dep: meryl

in- and out-of-core kmer counting and utilities
dep: perl

Larry Wall's Practical Extraction and Report Language
dep: python3

interactive high-level object-oriented language (default python3 version)

dep: python3 (<< 3.10)

dep: python3 (>= 3.9~)
dep: python3.9

Interactive high-level object-oriented language (version 3.9)

rec: kmer-examples

sample data for kmer suite of tools for DNA sequence analysis

Изтегляне на atac

Изтегляне за всички налични архитектури
Архитектура	Версия	Големина на пакета	Големина след инсталиране	Файлове
armhf	0~20150903+r2013-8+b1	337,1 кБ	2 064,0 кБ	[списък на файловете]