套件：lumpy-sv（0.3.1+dfsg-7 以及其他的）

lumpy-sv 的相關連結

Debian 的資源：

下載原始碼套件 lumpy-sv：

維護小組：

外部的資源：

主頁 [github.com]

相似套件：

general probabilistic framework for structural variant discovery

LUMPY, a novel SV discovery framework that naturally integrates multiple SV signals jointly across multiple samples. LUMPY yields improved sensitivity, especially when SV signal is reduced owing to either low coverage data or low intra-sample variant allele frequency.

其他與 lumpy-sv 有關的套件

依賴

推薦

建議

增強

dep: bamkit

tools for common BAM file manipulations
dep: libbamtools2.5.2 (>= 2.5.2+dfsg)

dynamic library for manipulating BAM (genome alignment) files
dep: libc6 (>= 2.34)

GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
dep: libgcc-s1 (>= 3.0) [除 armel, armhf, i386]

GCC 支援函式庫

dep: libgcc-s1 (>= 3.5) [armel, armhf]

dep: libgcc-s1 (>= 4.2) [i386]
dep: libgzstream0 (>= 1.5+dfsg)

provide functionality of zlib C-library in a C++ iostream
dep: libhts3t64 (>= 1.17)

C library for high-throughput sequencing data formats
dep: libstdc++6 (>= 13.1)

GNU Standard C++ Library v3
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-numpy

Fast array facility to the Python language (Python 3)
dep: python3-pysam

interface for the SAM/BAM sequence alignment and mapping format (Python 3)
dep: samblaster

marks duplicates, extracts discordant/split reads
dep: samtools

processing sequence alignments in SAM, BAM and CRAM formats

rec: sambamba

tools for working with SAM/BAM data

下載 lumpy-sv

下載可用於所有硬體架構的
硬體架構	版本	套件大小	安裝後大小	檔案
amd64	0.3.1+dfsg-7+b1	205。3 kB	689。0 kB	[檔案列表]
arm64	0.3.1+dfsg-7+b1	168。9 kB	677。0 kB	[檔案列表]
armel	0.3.1+dfsg-7+b1	162。2 kB	567。0 kB	[檔案列表]
armhf	0.3.1+dfsg-7+b1	169。2 kB	443。0 kB	[檔案列表]
i386	0.3.1+dfsg-7+b1	221。6 kB	735。0 kB	[檔案列表]
mips64el	0.3.1+dfsg-7+b1	175。8 kB	777。0 kB	[檔案列表]
ppc64el	0.3.1+dfsg-7+b1	194。5 kB	805。0 kB	[檔案列表]