[ 原始碼： r-cran-seurat ]
套件：r-cran-seurat（4.0.0-2）
Tools for Single Cell Genomics
A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, and Butler A and Satija R (2017) <doi:10.1101/164889> for more details.
其他與 r-cran-seurat 有關的套件
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- dep: libc6 (>= 2.29)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
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- dep: libgcc-s1 (>= 3.5)
- GCC 支援函式庫
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
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- dep: r-api-4.0
- 本虛擬套件由這些套件填實： r-base-core
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- dep: r-base-core (>= 4.0.3-1)
- GNU R core of statistical computation and graphics system
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- dep: r-cran-cluster
- GNU R package for cluster analysis by Rousseeuw et al
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- dep: r-cran-cowplot
- GNU R streamlined plot theme and plot annotations for 'ggplot2'
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- dep: r-cran-fitdistrplus
- support fit of parametric distribution
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- dep: r-cran-future
- R package: A Future API for R
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- dep: r-cran-future.apply
- apply function to elements in parallel using futures
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- dep: r-cran-ggplot2 (>= 3.3.0)
- implementation of the Grammar of Graphics
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- dep: r-cran-ggrepel
- auto-position non-overlapping text labels in plots
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- dep: r-cran-ggridges
- Ridgeline Plots in 'ggplot2'
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- dep: r-cran-httr
- GNU R tools for working with URLs and HTTP
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- dep: r-cran-ica
- Independent Component Analysis
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- dep: r-cran-igraph
- GNU R network analysis and visualization
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- dep: r-cran-irlba
- GNU R fast truncated SVD, PCA and symmetric eigendecomposition
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- dep: r-cran-jsonlite
- Robust, High Performance JSON Parser and Generator for R
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- dep: r-cran-kernsmooth
- GNU R package for kernel smoothing and density estimation
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- dep: r-cran-leiden (>= 0.3.1)
- GNU R implementation of Leiden clustering algorithm
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- dep: r-cran-lmtest
- GNU R package for diagnostic checking in linear models
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- dep: r-cran-mass
- GNU R package of Venables and Ripley's MASS
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- dep: r-cran-matrix (>= 1.2-14)
- GNU R package of classes for dense and sparse matrices
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- dep: r-cran-matrixstats
- GNU R methods that apply to rows and columns of a matrix
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- dep: r-cran-miniui
- Shiny UI Widgets for Small Screens
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- dep: r-cran-patchwork
- GNU R the composer of plots
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- dep: r-cran-pbapply
- GNU R package providing progress bars for vectorized R functions
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- dep: r-cran-plotly (>= 4.9.0)
- create interactive web graphics via 'plotly.js' in GNU R
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- dep: r-cran-png
- GNU R package to read and write PNG images
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- dep: r-cran-rann
- Fast Nearest Neighbour Search Using L2 Metric
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- dep: r-cran-rcolorbrewer
- GNU R package providing suitable color palettes
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- dep: r-cran-rcpp (>= 0.11.0)
- GNU R package for Seamless R and C++ Integration
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- dep: r-cran-rcppannoy (>= 0.0.18)
- Rcpp bindings for Annoy (approximate nearest neighbors)
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- dep: r-cran-rcppeigen
- GNU R package for Eigen templated linear algebra
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- dep: r-cran-rcppprogress
- interruptible progress bar for C++ in GNU R packages
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- dep: r-cran-reticulate
- R interface to Python modules, classes, and functions
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- dep: r-cran-rlang
- Functions for Base Types and Core R and 'Tidyverse' Features
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- dep: r-cran-rocr
- GNU R package to prepare and display ROC curves
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- dep: r-cran-rtsne
- GNU R T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut
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- dep: r-cran-scales
- Scale functions for visualization
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- dep: r-cran-scattermore (>= 0.7)
- GNU R scatterplots with more points
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- dep: r-cran-sctransform (>= 0.3.2)
- Variance Stabilizing Transformations for Single Cell UMI Data
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- dep: r-cran-seuratobject
- GNU R data structures for single cell data
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- dep: r-cran-shiny
- GNU R web application framework
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- dep: r-cran-spatstat
- GNU R Spatial Point Pattern analysis, model-fitting, simulation, tests
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- dep: r-cran-tibble
- GNU R Simple Data Frames
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- dep: r-cran-uwot (>= 0.1.9)
- GNU R uniform manifold approximation and projection (UMAP)
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- rec: r-cran-hdf5r
- GNU R interface to the 'HDF5' binary data format
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- rec: r-cran-testthat
- GNU R testsuite
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- sug: r-bioc-biobase
- base functions for Bioconductor
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- sug: r-bioc-biocgenerics
- generic functions for Bioconductor
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- sug: r-bioc-deseq2
- R package for RNA-Seq Differential Expression Analysis
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- sug: r-bioc-genomeinfodb
- BioConductor utilities for manipulating chromosome identifiers
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- sug: r-bioc-genomicranges
- BioConductor representation and manipulation of genomic intervals
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- sug: r-bioc-iranges
- GNU R low-level containers for storing sets of integer ranges
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- sug: r-bioc-limma
- linear models for microarray data
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- sug: r-bioc-monocle
- clustering, differential expression, and trajectory analysis for RNA-Seq
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- sug: r-bioc-rtracklayer
- GNU R interface to genome browsers and their annotation tracks
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- sug: r-bioc-s4vectors
- BioConductor S4 implementation of vectors and lists
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- sug: r-bioc-singlecellexperiment
- S4 Classes for Single Cell Data
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- sug: r-bioc-summarizedexperiment
- BioConductor assay container
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- sug: r-cran-ape
- GNU R package for Analyses of Phylogenetics and Evolution
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- sug: r-cran-metap
- Meta-Analysis of Significance Values
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- sug: r-cran-mixtools
- GNU R tools for analyzing finite mixture models
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- sug: r-cran-rsvd
- Randomized Singular Value Decomposition
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- sug: r-cran-vgam
- GNU R package for estimating vector generalized additive models