[ 原始碼： r-bioc-monocle ]
套件：r-bioc-monocle（2.18.0-1）
r-bioc-monocle 的相關連結
Debian 的資源：
下載原始碼套件 r-bioc-monocle：
- [r-bioc-monocle_2.18.0-1.dsc]
- [r-bioc-monocle_2.18.0.orig.tar.gz]
- [r-bioc-monocle_2.18.0-1.debian.tar.xz]
維護小組：
外部的資源：
- 主頁 [bioconductor.org]
相似套件：
clustering, differential expression, and trajectory analysis for RNA-Seq
Monocle performs differential expression and time-series analysis for single-cell expression experiments. It orders individual cells according to progress through a biological process, without knowing ahead of time which genes define progress through that process. Monocle also performs differential expression analysis, clustering, visualization, and other useful tasks on single cell expression data. It is designed to work with RNA-Seq and qPCR data, but could be used with other types as well.
其他與 r-bioc-monocle 有關的套件
|
|
|
|
-
- dep: libc6 (>= 2.4)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
-
- dep: libgcc-s1 (>= 3.5)
- GCC 支援函式庫
-
- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
-
- dep: r-api-4.0
- 本虛擬套件由這些套件填實： r-base-core
-
- dep: r-api-bioc-3.12
- 本虛擬套件由這些套件填實： r-bioc-biocgenerics
-
- dep: r-base-core (>= 4.0.3-1)
- GNU R core of statistical computation and graphics system
-
- dep: r-bioc-biobase
- base functions for Bioconductor
-
- dep: r-bioc-biocgenerics
- generic functions for Bioconductor
-
- dep: r-bioc-biocviews
- Categorized views of R package repositories
-
- dep: r-bioc-hsmmsinglecell (>= 0.101.5)
- Single-cell RNA-Seq for differentiating human skeletal muscle myoblasts
-
- dep: r-bioc-limma
- linear models for microarray data
-
- dep: r-cran-cluster
- GNU R package for cluster analysis by Rousseeuw et al
-
- dep: r-cran-combinat
- GNU R package with utilities for combinatorics
-
- dep: r-cran-ddrtree (>= 0.1.4)
- GNU R learning principal graphs with DDRTree
-
- dep: r-cran-densityclust (>= 0.3)
- GNU R clustering by fast search and find of density peaks
-
- dep: r-cran-dplyr
- GNU R grammar of data manipulation
-
- dep: r-cran-fastica
- GNU R package for ICA and Projection Pursuit
-
- dep: r-cran-ggplot2 (>= 1.0.0)
- implementation of the Grammar of Graphics
-
- dep: r-cran-igraph (>= 1.0.1)
- GNU R network analysis and visualization
-
- dep: r-cran-irlba (>= 2.0.0)
- GNU R fast truncated SVD, PCA and symmetric eigendecomposition
-
- dep: r-cran-mass
- GNU R package of Venables and Ripley's MASS
-
- dep: r-cran-matrix (>= 1.2-6)
- GNU R package of classes for dense and sparse matrices
-
- dep: r-cran-matrixstats
- GNU R methods that apply to rows and columns of a matrix
-
- dep: r-cran-pheatmap
- GNU R package to create pretty heatmaps
-
- dep: r-cran-plyr
- tools for splitting, applying and combining data
-
- dep: r-cran-proxy
- GNU R distance and similarity measures
-
- dep: r-cran-qlcmatrix
- GNU R utility sparse matrix functions for quantitative language
-
- dep: r-cran-rann (>= 2.5)
- Fast Nearest Neighbour Search Using L2 Metric
-
- dep: r-cran-rcpp (>= 0.12.0)
- GNU R package for Seamless R and C++ Integration
-
- dep: r-cran-reshape2
- Flexibly reshape data: a reboot of the reshape package
-
- dep: r-cran-rtsne
- GNU R T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut
-
- dep: r-cran-slam
- GNU R sparse lighweight arrays and matrices package
-
- dep: r-cran-stringr
- Make it easier to work with strings
-
- dep: r-cran-tibble
- GNU R Simple Data Frames
-
- dep: r-cran-vgam (>= 1.0-6)
- GNU R package for estimating vector generalized additive models
-
- dep: r-cran-viridis
- GNU R package for color maps from matplotlib
-
- rec: r-cran-testthat
- GNU R testsuite
-
- sug: r-bioc-destiny
- GNU R diffusion maps
-
- sug: r-bioc-scater
- Single-Cell Analysis Toolkit for Gene Expression Data in R
-
- sug: r-cran-hmisc
- GNU R miscellaneous functions by Frank Harrell
-
- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
-
- sug: r-cran-seurat
- Tools for Single Cell Genomics