软件包：libseqlib-dev（1.2.0+dfsg-11）

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C++ htslib/bwa-mem/fermi interface for interrogating sequence data (dev)

C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.

This package contains the header files and static library.

标签: 软件开发: 函数库, 角色: 开发用函数库

其他与 libseqlib-dev 有关的软件包

依赖

推荐

建议

增强

dep: libbwa-dev

Burrows-Wheeler Aligner source files
dep: libfml-dev

development headers for libfml
dep: libhts-dev

development files for the HTSlib
dep: libjsoncpp-dev

library for reading and writing JSON for C++ (devel files)
dep: libseqlib2 (= 1.2.0+dfsg-11)

C++ htslib/bwa-mem/fermi interface for interrogating sequence data
dep: libssw-dev

Development headers and static libraries for libssw
同时作为一个虚包由这些包填实： libssw-dev
dep: zlib1g-dev

压缩库 - 开发文件

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下载可用于所有硬件架构的
硬件架构	软件包大小	安装后大小	文件
amd64	215.5 kB	1,196.0 kB	[文件列表]
arm64	202.7 kB	1,207.0 kB	[文件列表]
armel	203.7 kB	1,107.0 kB	[文件列表]
armhf	205.2 kB	1,004.0 kB	[文件列表]
i386	228.1 kB	1,030.0 kB	[文件列表]
mips64el	224.3 kB	1,430.0 kB	[文件列表]
ppc64el	222.5 kB	1,300.0 kB	[文件列表]
s390x	207.9 kB	1,207.0 kB	[文件列表]