软件包：libseqlib-dev（1.2.0+dfsg-9）

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C++ htslib/bwa-mem/fermi interface for interrogating sequence data (dev)

C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.

This package contains the header files and static library.

标签: 软件开发: 函数库, 角色: 开发用函数库

其他与 libseqlib-dev 有关的软件包

依赖

推荐

建议

增强

dep: libbwa-dev

Burrows-Wheeler Aligner source files
dep: libfml-dev

development headers for libfml
dep: libhts-dev

development files for the HTSlib
dep: libjsoncpp-dev

library for reading and writing JSON for C++ (devel files)
dep: libseqlib2 (= 1.2.0+dfsg-9)

C++ htslib/bwa-mem/fermi interface for interrogating sequence data
dep: libssw-dev

Development headers and static libraries for libssw
同时作为一个虚包由这些包填实： libssw-dev
dep: zlib1g-dev

压缩库 - 开发文件

下载 libseqlib-dev

下载可用于所有硬件架构的
硬件架构	软件包大小	安装后大小	文件
amd64	204.5 kB	1,166.0 kB	[文件列表]
arm64	197.4 kB	1,162.0 kB	[文件列表]
armel	198.5 kB	1,082.0 kB	[文件列表]
armhf	201.1 kB	983.0 kB	[文件列表]
i386	218.3 kB	1,011.0 kB	[文件列表]
mips64el	221.2 kB	1,408.0 kB	[文件列表]
mipsel	218.3 kB	1,089.0 kB	[文件列表]
ppc64el	220.0 kB	1,285.0 kB	[文件列表]
s390x	188.5 kB	1,170.0 kB	[文件列表]