软件包：r-bioc-scran（1.30.2+dfsg-1） [debports]
BioConductor methods for single-cell RNA-Seq data analysis
Implements functions for low-level analyses of single-cell RNA-seq data. Methods are provided for normalization of cell-specific biases, assignment of cell cycle phase, detection of highly variable and significantly correlated genes, identification of marker genes, and other common tasks in routine single-cell analysis workflows.
其他与 r-bioc-scran 有关的软件包
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- dep: libc6 (>= 2.29)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
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- dep: libgcc-s4 (>= 4.1.1)
- GCC 支持库
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- dep: liblapack3
- Library of linear algebra routines 3 - shared version
- 或者 liblapack.so.3
- 本虚包由这些包填实： libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial
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- dep: libstdc++6 (>= 13.1)
- GNU 标准 C++ 库，第3版
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- dep: r-api-4.0
- 本虚包由这些包填实： r-base-core
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- dep: r-api-bioc-3.18
- 本虚包由这些包填实： r-bioc-biocgenerics
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- dep: r-bioc-beachmat
- I/O for several formats storing matrix data
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- dep: r-bioc-biocgenerics
- generic functions for Bioconductor
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- dep: r-bioc-biocparallel
- BioConductor facilities for parallel evaluation
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- dep: r-bioc-biocsingular
- Singular Value Decomposition for Bioconductor Packages
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- dep: r-bioc-bluster
- Clustering Algorithms for Bioconductor
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- dep: r-bioc-delayedarray
- BioConductor delayed operations on array-like objects
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- dep: r-bioc-delayedmatrixstats
- Functions on Rows and Columns of 'DelayedMatrix' Objects
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- dep: r-bioc-edger
- Empirical analysis of digital gene expression data in R
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- dep: r-bioc-limma
- linear models for microarray data
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- dep: r-bioc-metapod
- GNU R meta-analyses on P-Values of differential analyses
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- dep: r-bioc-s4vectors
- BioConductor S4 implementation of vectors and lists
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- dep: r-bioc-scuttle
- BioConductor single-cell RNA-Seq analysis utilities
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- dep: r-bioc-singlecellexperiment
- S4 Classes for Single Cell Data
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- dep: r-bioc-summarizedexperiment
- BioConductor assay container
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- dep: r-cran-bh
- (Virtual) GNU R package to provide BH
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- dep: r-cran-dqrng
- GNU R fast pseudo random number generators
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- dep: r-cran-igraph
- GNU R network analysis and visualization
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- dep: r-cran-matrix
- GNU R package of classes for dense and sparse matrices
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- dep: r-cran-rcpp
- GNU R package for Seamless R and C++ Integration
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- dep: r-cran-statmod
- GNU R package providing algorithms and functions for statistical modeling
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- sug: r-bioc-biobase
- base functions for Bioconductor
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- sug: r-bioc-biocstyle
- standard styles for vignettes and other Bioconductor documents
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- sug: r-bioc-deseq2
- R package for RNA-Seq Differential Expression Analysis
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- sug: r-bioc-hdf5array
- HDF5 backend for DelayedArray objects
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- sug: r-bioc-monocle
- clustering, differential expression, and trajectory analysis for RNA-Seq
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- sug: r-bioc-residualmatrix
- Creating a DelayedMatrix of Regression Residuals
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- sug: r-bioc-scaledmatrix
- creating a DelayedMatrix of scaled and centered values using GNU R
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- sug: r-bioc-scater
- Single-Cell Analysis Toolkit for Gene Expression Data in R
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- sug: r-bioc-scrnaseq
- Collection of Public Single-Cell RNA-Seq Datasets
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- sug: r-cran-dynamictreecut
- Methods for Detection of Clusters in Hierarchical Clustering
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- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
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- sug: r-cran-pheatmap
- GNU R package to create pretty heatmaps
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- sug: r-cran-rmarkdown
- convert R markdown documents into a variety of formats
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- sug: r-cran-testthat
- GNU R testsuite