Пакунок: ivar (1.4.2+dfsg-3 and others) [debports]

Links for ivar

Debian Resources:

Bug Reports

Download Source Package :

Не знайдено

Maintainers:

External Resources:

Homepage [github.com]

Similar packages:

functions broadly useful for viral amplicon-based sequencing

iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing. Additional tools for metagenomic sequencing are actively being incorporated into iVar. While each of these functions can be accomplished using existing tools, iVar contains an intersection of functionality from multiple tools that are required to call iSNVs and consensus sequences from viral sequencing data across multiple replicates. iVar provided the following functions:

 1. trimming of primers and low-quality bases,
 2. consensus calling,
 3. variant calling - both iSNVs and insertions/deletions, and
 4. identifying mismatches to primer sequences and excluding the
    corresponding reads from alignment files.

Інші пакунки пов'язані з ivar

depends

recommends

suggests

enhances

dep: libc6 (>= 2.34)

Бібліотека GNU C: спільні бібліотеки
also a virtual package provided by libc6-udeb
dep: libgcc-s2 (>= 4.2.1)

Допоміжна бібліотека GCC
dep: libhts3t64 (>= 1.17)

C library for high-throughput sequencing data formats
dep: libstdc++6 (>= 13.1)

Стандартна бібліотека C++ GNU, версії 3

rec: samtools

processing sequence alignments in SAM, BAM and CRAM formats

Завантажити ivar

Завантаження для всіх доступних архітектур
Архітектура	Версія	Розмір пакунка	Розмір після встановлення	Файли
m68k (unofficial port)	1.4.2+dfsg-3+b1	197.4 kB	1,473.0 kB	[список файлів]