Paket: mapsembler2 (2.2.3+dfsg-1) [debports]

mapsembler2 için bağlantılar

Debian Kaynakları:

Hata Raporları

Kaynak Paketini İndir:

Bulunamadı

Geliştiriciler:

Dış Kaynaklar:

Ana Sayfa [colibread.inria.fr]

Benzer paketler:

bioinformatics targeted assembly software

Mapsembler2 is a targeted assembly software. It takes as input a set of NGS raw reads (fasta or fastq, gzipped or not) and a set of input sequences (starters).

It first determines if each starter is read-coherent, e.g. whether reads confirm the presence of each starter in the original sequence. Then for each read-coherent starter, Mapsembler2 outputs its sequence neighborhood as a linear sequence or as a graph, depending on the user choice.

Mapsembler2 may be used for (not limited to):

 - Validate an assembled sequence (input as starter), e.g. from a de
   Bruijn graph assembly where read-coherence was not enforced.
 - Checks if a gene (input as starter) has an homolog in a set of reads
 - Checks if a known enzyme is present in a metagenomic NGS read set.
 - Enrich unmappable reads by extending them, possibly making them mappable
 - Checks what happens at the extremities of a contig
 - Remove contaminants or symbiont reads from a read set

mapsembler2 ile İlgili Diğer Paketler

bağımlılıklar

tavsiye edilen

önerilen

enhances

dep: bc

GNU bc arbitrary precision calculator language
dep: libc6 (>= 2.8)

GNU C Library: Shared libraries
ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb
dep: libgcc1 (>= 1:4.1.1)

Paket mevcut değil
dep: libgomp1 (>= 4.9)

GCC OpenMP (GOMP) support library
dep: libhdf5-8

Paket mevcut değil
dep: libstdc++6 (>= 4.9)

GNU Standard C++ Library v3
dep: zlib1g (>= 1:1.2.3.4)

compression library - runtime

mapsembler2 indir

Tüm mevcut mimariler için indir
Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
ppc64 (resmi olmayan port)	228,6 kB	928,0 kB	[dosya listesi]