tüm seçenekler
buster  ] [  bullseye  ] [  bookworm  ] [  trixie  ] [  sid  ]
[ Kaynak: transdecoder  ]

Paket: transdecoder-doc (5.7.1-2)

transdecoder-doc için bağlantılar

Screenshot

Debian Kaynakları:

transdecoder Kaynak Paketini İndir:

Geliştiriciler:

Dış Kaynaklar:

Benzer paketler:

find coding regions within transcripts

TransDecoder identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks.

TransDecoder identifies likely coding sequences based on the following criteria:

 * a minimum length open reading frame (ORF) is found in a transcript sequence
 * a log-likelihood score similar to what is computed by the GeneID software
   is > 0.
 * the above coding score is greatest when the ORF is scored in the 1st
   reading frame as compared to scores in the other 5 reading frames.
 * if a candidate ORF is found fully encapsulated by the coordinates of
   another candidate ORF, the longer one is reported. However, a single
   transcript can report multiple ORFs (allowing for operons, chimeras, etc).
 * optional the putative peptide has a match to a Pfam domain above the noise
   cutoff score.

This package contains the documentation and sample data.

transdecoder-doc ile İlgili Diğer Paketler

  • bağımlılıklar
  • tavsiye edilen
  • önerilen
  • enhances

transdecoder-doc indir

Tüm mevcut mimariler için indir
Mimari Paket Boyutu Kurulu Boyut Dosyalar
all 14.546,5 kB27.722,0 kB [dosya listesi]